Cluster: Rep_231_CGC42
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_231
- CGC Family ID: CGCFAM_00148
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_231_c_0 | Rep_231_c_0_2477 | 2987048 | 2988376 | + | 2.A.1.4.6 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2478 | 2989018 | 2991090 | - | GH127 |
| pfam | Rep_231_c_0 | Rep_231_c_0_2479 | 2991306 | 2992130 | + | Hydrolase | S6PP | Hydrolase_3 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2480 | 2992204 | 2994165 | - | GH97 |
| STP | Rep_231_c_0 | Rep_231_c_0_2481 | 2994322 | 2995521 | + | ACT | PALP |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2482 | 2995661 | 2998006 | - | GH3 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2483 | 2998068 | 2999294 | - | CE1 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2484 | 2999373 | 3000575 | - | CE1 |
| NULL(UNKNOWN) | Rep_231_c_0 | Rep_231_c_0_2485 | 3000605 | 3001522 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_231_c_0 | Rep_231_c_0_2486 | 3001557 | 3003119 | - | 8.A.46.1.6 |
| TC | Rep_231_c_0 | Rep_231_c_0_2487 | 3003183 | 3006248 | - | 1.B.14.6.1 |
Gene ID: Rep_231_c_0_2477
Type: TC
Location: 2987048 - 2988376 (+)
Type: TC
Location: 2987048 - 2988376 (+)
Gene ID: Rep_231_c_0_2478
Type: CAZyme
Location: 2989018 - 2991090 (-)
Type: CAZyme
Location: 2989018 - 2991090 (-)
Gene ID: Rep_231_c_0_2479
Type: pfam
Location: 2991306 - 2992130 (+)
Type: pfam
Location: 2991306 - 2992130 (+)
Gene ID: Rep_231_c_0_2480
Type: CAZyme
Location: 2992204 - 2994165 (-)
Type: CAZyme
Location: 2992204 - 2994165 (-)
Gene ID: Rep_231_c_0_2481
Type: STP
Location: 2994322 - 2995521 (+)
Type: STP
Location: 2994322 - 2995521 (+)
Gene ID: Rep_231_c_0_2482
Type: CAZyme
Location: 2995661 - 2998006 (-)
Type: CAZyme
Location: 2995661 - 2998006 (-)
Gene ID: Rep_231_c_0_2483
Type: CAZyme
Location: 2998068 - 2999294 (-)
Type: CAZyme
Location: 2998068 - 2999294 (-)
Gene ID: Rep_231_c_0_2484
Type: CAZyme
Location: 2999373 - 3000575 (-)
Type: CAZyme
Location: 2999373 - 3000575 (-)
Gene ID: Rep_231_c_0_2485
Type:
Location: 3000605 - 3001522 (-)
Type:
Location: 3000605 - 3001522 (-)
Gene ID: Rep_231_c_0_2486
Type: TC
Location: 3001557 - 3003119 (-)
Type: TC
Location: 3001557 - 3003119 (-)
Gene ID: Rep_231_c_0_2487
Type: TC
Location: 3003183 - 3006248 (-)
Type: TC
Location: 3003183 - 3006248 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_231_c_0_2477 | vegetarian > omnivore | 1.98537 | 0.00290 |
| Rep_231_c_0_2485 | vegetarian > vegan | 1.32246 | 0.00951 |