Cluster: Rep_231_CGC4
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate: fructan
- Genome ID: Rep_231
- CGC Family ID: CGCFAM_00240
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_231_c_0 | Rep_231_c_0_174 | 211327 | 213225 | + | GH32 |
| pfam | Rep_231_c_0 | Rep_231_c_0_175 | 213351 | 215117 | + | PDDEXK_9 | AAA-ATPase_like |
| TF | Rep_231_c_0 | Rep_231_c_0_176 | 215114 | 216628 | + | HTH_AraC |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_177 | 216821 | 218986 | + | GH32 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_178 | 218999 | 220468 | + | GH32 |
| TC | Rep_231_c_0 | Rep_231_c_0_179 | 220630 | 223650 | + | 1.B.14.6.1 |
| TC | Rep_231_c_0 | Rep_231_c_0_180 | 223678 | 225351 | + | 8.A.46.1.3 |
| pfam | Rep_231_c_0 | Rep_231_c_0_181 | 225383 | 226582 | + | DUF4960 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_182 | 226709 | 229186 | + | GH32 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_183 | 229621 | 231339 | + | GH32 |
| TC | Rep_231_c_0 | Rep_231_c_0_184 | 231503 | 232654 | + | 2.A.1.7.17 |
| STP | Rep_231_c_0 | Rep_231_c_0_185 | 232702 | 233592 | + | PfkB |
| pfam | Rep_231_c_0 | Rep_231_c_0_186 | 233905 | 234921 | + | Aminotran_4 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_187 | 235405 | 237537 | - | GH115 |
| TC | Rep_231_c_0 | Rep_231_c_0_188 | 237707 | 238807 | + | 3.A.1.132.3 |
Gene ID: Rep_231_c_0_174
Type: CAZyme
Location: 211327 - 213225 (+)
Type: CAZyme
Location: 211327 - 213225 (+)
Gene ID: Rep_231_c_0_175
Type: pfam
Location: 213351 - 215117 (+)
Type: pfam
Location: 213351 - 215117 (+)
Gene ID: Rep_231_c_0_176
Type: TF
Location: 215114 - 216628 (+)
Type: TF
Location: 215114 - 216628 (+)
Gene ID: Rep_231_c_0_177
Type: CAZyme
Location: 216821 - 218986 (+)
Type: CAZyme
Location: 216821 - 218986 (+)
Gene ID: Rep_231_c_0_178
Type: CAZyme
Location: 218999 - 220468 (+)
Type: CAZyme
Location: 218999 - 220468 (+)
Gene ID: Rep_231_c_0_179
Type: TC
Location: 220630 - 223650 (+)
Type: TC
Location: 220630 - 223650 (+)
Gene ID: Rep_231_c_0_180
Type: TC
Location: 223678 - 225351 (+)
Type: TC
Location: 223678 - 225351 (+)
Gene ID: Rep_231_c_0_181
Type: pfam
Location: 225383 - 226582 (+)
Type: pfam
Location: 225383 - 226582 (+)
Gene ID: Rep_231_c_0_182
Type: CAZyme
Location: 226709 - 229186 (+)
Type: CAZyme
Location: 226709 - 229186 (+)
Gene ID: Rep_231_c_0_183
Type: CAZyme
Location: 229621 - 231339 (+)
Type: CAZyme
Location: 229621 - 231339 (+)
Gene ID: Rep_231_c_0_184
Type: TC
Location: 231503 - 232654 (+)
Type: TC
Location: 231503 - 232654 (+)
Gene ID: Rep_231_c_0_185
Type: STP
Location: 232702 - 233592 (+)
Type: STP
Location: 232702 - 233592 (+)
Gene ID: Rep_231_c_0_186
Type: pfam
Location: 233905 - 234921 (+)
Type: pfam
Location: 233905 - 234921 (+)
Gene ID: Rep_231_c_0_187
Type: CAZyme
Location: 235405 - 237537 (-)
Type: CAZyme
Location: 235405 - 237537 (-)
Gene ID: Rep_231_c_0_188
Type: TC
Location: 237707 - 238807 (+)
Type: TC
Location: 237707 - 238807 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_231_c_0_176 | vegetarian > omnivore | 1.00987 | 0.00290 |
| Rep_231_c_0_179 | vegetarian > omnivore | 1.58374 | 0.00290 |
| Rep_231_c_0_179 | vegetarian > vegan | 1.20334 | 0.00951 |