Cluster: Rep_231_CGC39
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 9
- Substrate:
- Genome ID: Rep_231
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2392 | 2872747 | 2876736 | - | CBM57 | CBM97 | GH137 | GH2 |
| pfam | Rep_231_c_0 | Rep_231_c_0_2393 | 2876922 | 2878727 | - | SusD_RagB | SusD-like_3 |
| pfam | Rep_231_c_0 | Rep_231_c_0_2394 | 2878741 | 2880909 | - | TonB_dep_Rec_b-barrel |
| TC | Rep_231_c_0 | Rep_231_c_0_2395 | 2881056 | 2882081 | - | 1.B.14.6.2 |
| pfam | Rep_231_c_0 | Rep_231_c_0_2396 | 2882254 | 2883477 | + | DDE_Tnp_1 | DDE_5 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2397 | 2883902 | 2886616 | - | GH138 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2398 | 2886750 | 2890718 | - | CBM67 | GH33 | GH78 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2399 | 2890776 | 2892248 | - | GH140 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2400 | 2892292 | 2894772 | - | GH95 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2401 | 2894909 | 2896225 | - | CE19 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2402 | 2896176 | 2898689 | - | CBM67 | GH78 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2403 | 2898708 | 2903036 | - | GH142 | GH143 | GH43_18 |
| pfam | Rep_231_c_0 | Rep_231_c_0_2404 | 2903165 | 2905261 | + | DEAD | Helicase_C | ResIII | RecG_wedge | RecG_dom3_C |
| NULL(UNKNOWN) | Rep_231_c_0 | Rep_231_c_0_2405 | 2905416 | 2905736 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2406 | 2905972 | 2906922 | + | CBM50 |
Gene ID: Rep_231_c_0_2392
Type: CAZyme
Location: 2872747 - 2876736 (-)
Type: CAZyme
Location: 2872747 - 2876736 (-)
Gene ID: Rep_231_c_0_2393
Type: pfam
Location: 2876922 - 2878727 (-)
Type: pfam
Location: 2876922 - 2878727 (-)
Gene ID: Rep_231_c_0_2394
Type: pfam
Location: 2878741 - 2880909 (-)
Type: pfam
Location: 2878741 - 2880909 (-)
Gene ID: Rep_231_c_0_2395
Type: TC
Location: 2881056 - 2882081 (-)
Type: TC
Location: 2881056 - 2882081 (-)
Gene ID: Rep_231_c_0_2396
Type: pfam
Location: 2882254 - 2883477 (+)
Type: pfam
Location: 2882254 - 2883477 (+)
Gene ID: Rep_231_c_0_2397
Type: CAZyme
Location: 2883902 - 2886616 (-)
Type: CAZyme
Location: 2883902 - 2886616 (-)
Gene ID: Rep_231_c_0_2398
Type: CAZyme
Location: 2886750 - 2890718 (-)
Type: CAZyme
Location: 2886750 - 2890718 (-)
Gene ID: Rep_231_c_0_2399
Type: CAZyme
Location: 2890776 - 2892248 (-)
Type: CAZyme
Location: 2890776 - 2892248 (-)
Gene ID: Rep_231_c_0_2400
Type: CAZyme
Location: 2892292 - 2894772 (-)
Type: CAZyme
Location: 2892292 - 2894772 (-)
Gene ID: Rep_231_c_0_2401
Type: CAZyme
Location: 2894909 - 2896225 (-)
Type: CAZyme
Location: 2894909 - 2896225 (-)
Gene ID: Rep_231_c_0_2402
Type: CAZyme
Location: 2896176 - 2898689 (-)
Type: CAZyme
Location: 2896176 - 2898689 (-)
Gene ID: Rep_231_c_0_2403
Type: CAZyme
Location: 2898708 - 2903036 (-)
Type: CAZyme
Location: 2898708 - 2903036 (-)
Gene ID: Rep_231_c_0_2404
Type: pfam
Location: 2903165 - 2905261 (+)
Type: pfam
Location: 2903165 - 2905261 (+)
Gene ID: Rep_231_c_0_2405
Type:
Location: 2905416 - 2905736 (+)
Type:
Location: 2905416 - 2905736 (+)
Gene ID: Rep_231_c_0_2406
Type: CAZyme
Location: 2905972 - 2906922 (+)
Type: CAZyme
Location: 2905972 - 2906922 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_231_c_0_2392 | vegetarian > omnivore | 3.38927 | 0.00290 |
| Rep_231_c_0_2392 | vegan > omnivore | 3.55923 | 0.02769 |
| Rep_231_c_0_2393 | vegetarian > omnivore | 2.76626 | 0.00290 |
| Rep_231_c_0_2394 | vegetarian > omnivore | 3.17971 | 0.00290 |
| Rep_231_c_0_2395 | vegetarian > omnivore | 3.02491 | 0.00290 |
| Rep_231_c_0_2397 | vegan > omnivore | 3.02348 | 0.02769 |
| Rep_231_c_0_2397 | vegetarian > omnivore | 2.83219 | 0.00290 |
| Rep_231_c_0_2398 | vegetarian > omnivore | 3.89756 | 0.00290 |
| Rep_231_c_0_2399 | vegetarian > omnivore | 2.95953 | 0.00290 |
| Rep_231_c_0_2400 | vegetarian > omnivore | 3.66682 | 0.00290 |
| Rep_231_c_0_2401 | vegetarian > omnivore | 3.54663 | 0.00290 |
| Rep_231_c_0_2402 | vegetarian > omnivore | 3.28614 | 0.00290 |
| Rep_231_c_0_2403 | vegetarian > omnivore | 3.60408 | 0.00290 |