Cluster: Rep_231_CGC38
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_231
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2374 | 2834031 | 2835776 | - | PL1_2 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2375 | 2835975 | 2838560 | + | PL1_2 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2376 | 2838657 | 2841422 | + | PL1_2 |
| pfam | Rep_231_c_0 | Rep_231_c_0_2377 | 2842187 | 2844376 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_231_c_0 | Rep_231_c_0_2378 | 2844412 | 2847723 | - | 1.B.14.6.1 |
Gene ID: Rep_231_c_0_2374
Type: CAZyme
Location: 2834031 - 2835776 (-)
Type: CAZyme
Location: 2834031 - 2835776 (-)
Gene ID: Rep_231_c_0_2375
Type: CAZyme
Location: 2835975 - 2838560 (+)
Type: CAZyme
Location: 2835975 - 2838560 (+)
Gene ID: Rep_231_c_0_2376
Type: CAZyme
Location: 2838657 - 2841422 (+)
Type: CAZyme
Location: 2838657 - 2841422 (+)
Gene ID: Rep_231_c_0_2377
Type: pfam
Location: 2842187 - 2844376 (-)
Type: pfam
Location: 2842187 - 2844376 (-)
Gene ID: Rep_231_c_0_2378
Type: TC
Location: 2844412 - 2847723 (-)
Type: TC
Location: 2844412 - 2847723 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_231_c_0_2375 | vegetarian > omnivore | 3.26150 | 0.00290 |
| Rep_231_c_0_2377 | vegetarian > omnivore | 2.24021 | 0.00290 |
| Rep_231_c_0_2378 | vegan > omnivore | 2.27309 | 0.02769 |
| Rep_231_c_0_2378 | vegetarian > omnivore | 1.73755 | 0.00290 |