Cluster: Rep_231_CGC37
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_231
- CGC Family ID: CGCFAM_00034
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2343 | 2784886 | 2787327 | + | GH51_2 |
| TC | Rep_231_c_0 | Rep_231_c_0_2344 | 2787469 | 2788773 | - | 2.A.40.7.6 |
| NULL(UNKNOWN) | Rep_231_c_0 | Rep_231_c_0_2345 | 2788883 | 2789056 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2346 | 2789405 | 2790415 | - | GH43_5 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2347 | 2790541 | 2792199 | - | GH43_4 |
| pfam | Rep_231_c_0 | Rep_231_c_0_2348 | 2792331 | 2794142 | - | Big_3 |
| pfam | Rep_231_c_0 | Rep_231_c_0_2349 | 2794228 | 2795985 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_231_c_0 | Rep_231_c_0_2350 | 2796038 | 2799244 | - | 1.B.14.6.1 |
| TF | Rep_231_c_0 | Rep_231_c_0_2351 | 2799611 | 2802601 | - | HTH_AraC |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2352 | 2802722 | 2804647 | - | GH13_46 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2353 | 2804676 | 2806628 | - | GH13_14 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2354 | 2806760 | 2808895 | - | GH97 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2355 | 2809072 | 2811747 | - | GH77 |
| TC | Rep_231_c_0 | Rep_231_c_0_2356 | 2811916 | 2813256 | - | 2.A.2.6.2 |
| TF | Rep_231_c_0 | Rep_231_c_0_2357 | 2813274 | 2814275 | - | LacI |
| TC | Rep_231_c_0 | Rep_231_c_0_2358 | 2814645 | 2817743 | + | 1.B.14.6.1 |
| TC | Rep_231_c_0 | Rep_231_c_0_2359 | 2817756 | 2819372 | + | 8.A.46.1.1 |
Gene ID: Rep_231_c_0_2343
Type: CAZyme
Location: 2784886 - 2787327 (+)
Type: CAZyme
Location: 2784886 - 2787327 (+)
Gene ID: Rep_231_c_0_2344
Type: TC
Location: 2787469 - 2788773 (-)
Type: TC
Location: 2787469 - 2788773 (-)
Gene ID: Rep_231_c_0_2345
Type:
Location: 2788883 - 2789056 (+)
Type:
Location: 2788883 - 2789056 (+)
Gene ID: Rep_231_c_0_2346
Type: CAZyme
Location: 2789405 - 2790415 (-)
Type: CAZyme
Location: 2789405 - 2790415 (-)
Gene ID: Rep_231_c_0_2347
Type: CAZyme
Location: 2790541 - 2792199 (-)
Type: CAZyme
Location: 2790541 - 2792199 (-)
Gene ID: Rep_231_c_0_2348
Type: pfam
Location: 2792331 - 2794142 (-)
Type: pfam
Location: 2792331 - 2794142 (-)
Gene ID: Rep_231_c_0_2349
Type: pfam
Location: 2794228 - 2795985 (-)
Type: pfam
Location: 2794228 - 2795985 (-)
Gene ID: Rep_231_c_0_2350
Type: TC
Location: 2796038 - 2799244 (-)
Type: TC
Location: 2796038 - 2799244 (-)
Gene ID: Rep_231_c_0_2351
Type: TF
Location: 2799611 - 2802601 (-)
Type: TF
Location: 2799611 - 2802601 (-)
Gene ID: Rep_231_c_0_2352
Type: CAZyme
Location: 2802722 - 2804647 (-)
Type: CAZyme
Location: 2802722 - 2804647 (-)
Gene ID: Rep_231_c_0_2353
Type: CAZyme
Location: 2804676 - 2806628 (-)
Type: CAZyme
Location: 2804676 - 2806628 (-)
Gene ID: Rep_231_c_0_2354
Type: CAZyme
Location: 2806760 - 2808895 (-)
Type: CAZyme
Location: 2806760 - 2808895 (-)
Gene ID: Rep_231_c_0_2355
Type: CAZyme
Location: 2809072 - 2811747 (-)
Type: CAZyme
Location: 2809072 - 2811747 (-)
Gene ID: Rep_231_c_0_2356
Type: TC
Location: 2811916 - 2813256 (-)
Type: TC
Location: 2811916 - 2813256 (-)
Gene ID: Rep_231_c_0_2357
Type: TF
Location: 2813274 - 2814275 (-)
Type: TF
Location: 2813274 - 2814275 (-)
Gene ID: Rep_231_c_0_2358
Type: TC
Location: 2814645 - 2817743 (+)
Type: TC
Location: 2814645 - 2817743 (+)
Gene ID: Rep_231_c_0_2359
Type: TC
Location: 2817756 - 2819372 (+)
Type: TC
Location: 2817756 - 2819372 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_231_c_0_2347 | vegetarian > omnivore | 1.78954 | 0.00290 |
| Rep_231_c_0_2347 | vegetarian > vegan | 1.59145 | 0.00951 |
| Rep_231_c_0_2348 | vegetarian > vegan | 1.56030 | 0.00951 |
| Rep_231_c_0_2348 | vegetarian > omnivore | 1.97456 | 0.00290 |
| Rep_231_c_0_2349 | vegetarian > vegan | 1.17794 | 0.00951 |
| Rep_231_c_0_2350 | vegetarian > vegan | 1.15905 | 0.00951 |