Cluster: Rep_231_CGC36
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_231
- CGC Family ID: CGCFAM_06311
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2310 | 2736423 | 2737517 | - | CE2 |
| TF | Rep_231_c_0 | Rep_231_c_0_2311 | 2738365 | 2739693 | + | HTH_8 |
| NULL(UNKNOWN) | Rep_231_c_0 | Rep_231_c_0_2312 | 2739907 | 2740002 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_231_c_0 | Rep_231_c_0_2313 | 2740108 | 2741814 | + | 3.A.3.7.2 |
| TC | Rep_231_c_0 | Rep_231_c_0_2314 | 2741841 | 2743883 | + | 3.A.3.7.2 |
| TC | Rep_231_c_0 | Rep_231_c_0_2315 | 2743943 | 2744536 | + | 3.A.3.7.2 |
| pfam | Rep_231_c_0 | Rep_231_c_0_2316 | 2744538 | 2745254 | + | Gcw_chp |
| TC | Rep_231_c_0 | Rep_231_c_0_2317 | 2745465 | 2746973 | + | 2.A.38.1.1 |
| pfam | Rep_231_c_0 | Rep_231_c_0_2318 | 2747066 | 2748205 | + | KdpD |
| NULL(UNKNOWN) | Rep_231_c_0 | Rep_231_c_0_2319 | 2748304 | 2748459 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_231_c_0 | Rep_231_c_0_2320 | 2748612 | 2750054 | + | 2.A.21.9.1 |
Gene ID: Rep_231_c_0_2310
Type: CAZyme
Location: 2736423 - 2737517 (-)
Type: CAZyme
Location: 2736423 - 2737517 (-)
Gene ID: Rep_231_c_0_2311
Type: TF
Location: 2738365 - 2739693 (+)
Type: TF
Location: 2738365 - 2739693 (+)
Gene ID: Rep_231_c_0_2312
Type:
Location: 2739907 - 2740002 (+)
Type:
Location: 2739907 - 2740002 (+)
Gene ID: Rep_231_c_0_2313
Type: TC
Location: 2740108 - 2741814 (+)
Type: TC
Location: 2740108 - 2741814 (+)
Gene ID: Rep_231_c_0_2314
Type: TC
Location: 2741841 - 2743883 (+)
Type: TC
Location: 2741841 - 2743883 (+)
Gene ID: Rep_231_c_0_2315
Type: TC
Location: 2743943 - 2744536 (+)
Type: TC
Location: 2743943 - 2744536 (+)
Gene ID: Rep_231_c_0_2316
Type: pfam
Location: 2744538 - 2745254 (+)
Type: pfam
Location: 2744538 - 2745254 (+)
Gene ID: Rep_231_c_0_2317
Type: TC
Location: 2745465 - 2746973 (+)
Type: TC
Location: 2745465 - 2746973 (+)
Gene ID: Rep_231_c_0_2318
Type: pfam
Location: 2747066 - 2748205 (+)
Type: pfam
Location: 2747066 - 2748205 (+)
Gene ID: Rep_231_c_0_2319
Type:
Location: 2748304 - 2748459 (-)
Type:
Location: 2748304 - 2748459 (-)
Gene ID: Rep_231_c_0_2320
Type: TC
Location: 2748612 - 2750054 (+)
Type: TC
Location: 2748612 - 2750054 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_231_c_0_2311 | vegan > omnivore | 1.53952 | 0.02769 |
| Rep_231_c_0_2312 | vegetarian > omnivore | 1.08163 | 0.00290 |
| Rep_231_c_0_2313 | vegan > omnivore | 1.28760 | 0.01560 |
| Rep_231_c_0_2317 | vegan > omnivore | 1.05430 | 0.03124 |
| Rep_231_c_0_2319 | vegan > omnivore | 1.21944 | 0.02769 |
| Rep_231_c_0_2320 | vegan > omnivore | 1.09757 | 0.02769 |