Cluster: Rep_231_CGC34
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_231
- CGC Family ID: CGCFAM_02925
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_231_c_0 | Rep_231_c_0_2259 | 2668883 | 2670253 | - | 2.A.62.1.3 |
| NULL(UNKNOWN) | Rep_231_c_0 | Rep_231_c_0_2260 | 2670496 | 2671413 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2261 | 2671555 | 2673291 | - | GH13_44 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2262 | 2673349 | 2675442 | - | GH97 |
| pfam | Rep_231_c_0 | Rep_231_c_0_2263 | 2675658 | 2677301 | + | DUF6377 |
| TC | Rep_231_c_0 | Rep_231_c_0_2264 | 2677489 | 2680305 | + | 1.B.14.12.3 |
Gene ID: Rep_231_c_0_2259
Type: TC
Location: 2668883 - 2670253 (-)
Type: TC
Location: 2668883 - 2670253 (-)
Gene ID: Rep_231_c_0_2260
Type:
Location: 2670496 - 2671413 (+)
Type:
Location: 2670496 - 2671413 (+)
Gene ID: Rep_231_c_0_2261
Type: CAZyme
Location: 2671555 - 2673291 (-)
Type: CAZyme
Location: 2671555 - 2673291 (-)
Gene ID: Rep_231_c_0_2262
Type: CAZyme
Location: 2673349 - 2675442 (-)
Type: CAZyme
Location: 2673349 - 2675442 (-)
Gene ID: Rep_231_c_0_2263
Type: pfam
Location: 2675658 - 2677301 (+)
Type: pfam
Location: 2675658 - 2677301 (+)
Gene ID: Rep_231_c_0_2264
Type: TC
Location: 2677489 - 2680305 (+)
Type: TC
Location: 2677489 - 2680305 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_231_c_0_2259 | vegetarian > vegan | 1.04386 | 0.00951 |
| Rep_231_c_0_2264 | vegetarian > vegan | 1.01581 | 0.00951 |