Cluster: Rep_231_CGC32
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_231
- CGC Family ID: CGCFAM_05962
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_231_c_0 | Rep_231_c_0_2132 | 2500088 | 2501350 | - | 1.A.11.2.7 |
| pfam | Rep_231_c_0 | Rep_231_c_0_2133 | 2501516 | 2501872 | - | P-II |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2134 | 2502219 | 2505362 | - | GH2 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_2135 | 2505373 | 2507715 | - | GH20 |
Gene ID: Rep_231_c_0_2132
Type: TC
Location: 2500088 - 2501350 (-)
Type: TC
Location: 2500088 - 2501350 (-)
Gene ID: Rep_231_c_0_2133
Type: pfam
Location: 2501516 - 2501872 (-)
Type: pfam
Location: 2501516 - 2501872 (-)
Gene ID: Rep_231_c_0_2134
Type: CAZyme
Location: 2502219 - 2505362 (-)
Type: CAZyme
Location: 2502219 - 2505362 (-)
Gene ID: Rep_231_c_0_2135
Type: CAZyme
Location: 2505373 - 2507715 (-)
Type: CAZyme
Location: 2505373 - 2507715 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_231_c_0_2132 | vegetarian > vegan | 1.34446 | 0.00951 |
| Rep_231_c_0_2133 | vegetarian > vegan | 1.38377 | 0.00951 |
| Rep_231_c_0_2134 | vegetarian > omnivore | 1.06890 | 0.00290 |
| Rep_231_c_0_2134 | vegetarian > vegan | 1.04654 | 0.00951 |
| Rep_231_c_0_2135 | vegetarian > omnivore | 1.15685 | 0.00290 |
| Rep_231_c_0_2135 | vegetarian > vegan | 1.01369 | 0.00951 |