Cluster: Rep_231_CGC29
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_231
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_231_c_0 | Rep_231_c_0_1850 | 2134735 | 2137284 | + | GT51 |
| pfam | Rep_231_c_0 | Rep_231_c_0_1851 | 2137392 | 2139128 | + | PIF1 | AAA_19 | AAA_22 | AAA_30 |
| TC | Rep_231_c_0 | Rep_231_c_0_1852 | 2139241 | 2142081 | - | 1.B.42.1.8 |
| STP | Rep_231_c_0 | Rep_231_c_0_1853 | 2142122 | 2142658 | - | HD |
| TC | Rep_231_c_0 | Rep_231_c_0_1854 | 2142670 | 2144445 | - | 3.B.1.1.6 |
Gene ID: Rep_231_c_0_1850
Type: CAZyme
Location: 2134735 - 2137284 (+)
Type: CAZyme
Location: 2134735 - 2137284 (+)
Gene ID: Rep_231_c_0_1851
Type: pfam
Location: 2137392 - 2139128 (+)
Type: pfam
Location: 2137392 - 2139128 (+)
Gene ID: Rep_231_c_0_1852
Type: TC
Location: 2139241 - 2142081 (-)
Type: TC
Location: 2139241 - 2142081 (-)
Gene ID: Rep_231_c_0_1853
Type: STP
Location: 2142122 - 2142658 (-)
Type: STP
Location: 2142122 - 2142658 (-)
Gene ID: Rep_231_c_0_1854
Type: TC
Location: 2142670 - 2144445 (-)
Type: TC
Location: 2142670 - 2144445 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.