Cluster: Rep_231_CGC28
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_231
- CGC Family ID: CGCFAM_00551
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_231_c_0 | Rep_231_c_0_1771 | 2055761 | 2056888 | - | 1.B.6.1.2 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_1772 | 2057145 | 2059745 | - | GH51_2 |
| pfam | Rep_231_c_0 | Rep_231_c_0_1773 | 2059916 | 2060794 | - | THF_DHG_CYH | THF_DHG_CYH_C |
| TC | Rep_231_c_0 | Rep_231_c_0_1774 | 2060873 | 2062225 | - | 3.A.5.1.1 |
Gene ID: Rep_231_c_0_1771
Type: TC
Location: 2055761 - 2056888 (-)
Type: TC
Location: 2055761 - 2056888 (-)
Gene ID: Rep_231_c_0_1772
Type: CAZyme
Location: 2057145 - 2059745 (-)
Type: CAZyme
Location: 2057145 - 2059745 (-)
Gene ID: Rep_231_c_0_1773
Type: pfam
Location: 2059916 - 2060794 (-)
Type: pfam
Location: 2059916 - 2060794 (-)
Gene ID: Rep_231_c_0_1774
Type: TC
Location: 2060873 - 2062225 (-)
Type: TC
Location: 2060873 - 2062225 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.