Cluster: Rep_231_CGC22
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_231
- CGC Family ID: CGCFAM_00059
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_231_c_0 | Rep_231_c_0_1117 | 1358672 | 1359565 | + | GH25 |
| pfam | Rep_231_c_0 | Rep_231_c_0_1118 | 1359677 | 1360549 | - | Ubie_methyltran | MTS | PrmA | Methyltransf_11 | Methyltransf_25 | Methyltransf_31 |
| NULL(UNKNOWN) | Rep_231_c_0 | Rep_231_c_0_1119 | 1360822 | 1361814 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_231_c_0 | Rep_231_c_0_1120 | 1361938 | 1363536 | + | 1.B.9.4.2 |
| pfam | Rep_231_c_0 | Rep_231_c_0_1121 | 1364003 | 1366096 | - | DsbD_TM | DsbD_N | Thioredoxin_2 | Thioredoxin_7 |
| NULL(UNKNOWN) | Rep_231_c_0 | Rep_231_c_0_1122 | 1366313 | 1366555 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_231_c_0 | Rep_231_c_0_1123 | 1366807 | 1368027 | + | 2.A.6.1.2 |
| TC | Rep_231_c_0 | Rep_231_c_0_1124 | 1368078 | 1371236 | + | 2.A.6.1.5 |
Gene ID: Rep_231_c_0_1117
Type: CAZyme
Location: 1358672 - 1359565 (+)
Type: CAZyme
Location: 1358672 - 1359565 (+)
Gene ID: Rep_231_c_0_1118
Type: pfam
Location: 1359677 - 1360549 (-)
Type: pfam
Location: 1359677 - 1360549 (-)
Gene ID: Rep_231_c_0_1119
Type:
Location: 1360822 - 1361814 (+)
Type:
Location: 1360822 - 1361814 (+)
Gene ID: Rep_231_c_0_1120
Type: TC
Location: 1361938 - 1363536 (+)
Type: TC
Location: 1361938 - 1363536 (+)
Gene ID: Rep_231_c_0_1121
Type: pfam
Location: 1364003 - 1366096 (-)
Type: pfam
Location: 1364003 - 1366096 (-)
Gene ID: Rep_231_c_0_1122
Type:
Location: 1366313 - 1366555 (-)
Type:
Location: 1366313 - 1366555 (-)
Gene ID: Rep_231_c_0_1123
Type: TC
Location: 1366807 - 1368027 (+)
Type: TC
Location: 1366807 - 1368027 (+)
Gene ID: Rep_231_c_0_1124
Type: TC
Location: 1368078 - 1371236 (+)
Type: TC
Location: 1368078 - 1371236 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_231_c_0_1122 | vegetarian > omnivore | 1.60524 | 0.00290 |
| Rep_231_c_0_1123 | vegetarian > omnivore | 2.10858 | 0.00290 |
| Rep_231_c_0_1124 | vegetarian > omnivore | 2.01732 | 0.00290 |