Cluster: Rep_231_CGC21
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_231
- CGC Family ID: CGCFAM_09680
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_231_c_0 | Rep_231_c_0_1016 | 1243765 | 1245435 | - | GH25 |
| pfam | Rep_231_c_0 | Rep_231_c_0_1017 | 1245432 | 1246781 | - | ATP_bind_3 |
| pfam | Rep_231_c_0 | Rep_231_c_0_1018 | 1246816 | 1247559 | - | CTP_transf_3 | NTP_transf_3 |
| TC | Rep_231_c_0 | Rep_231_c_0_1019 | 1247731 | 1248969 | - | 3.A.1.122.1 |
Gene ID: Rep_231_c_0_1016
Type: CAZyme
Location: 1243765 - 1245435 (-)
Type: CAZyme
Location: 1243765 - 1245435 (-)
Gene ID: Rep_231_c_0_1017
Type: pfam
Location: 1245432 - 1246781 (-)
Type: pfam
Location: 1245432 - 1246781 (-)
Gene ID: Rep_231_c_0_1018
Type: pfam
Location: 1246816 - 1247559 (-)
Type: pfam
Location: 1246816 - 1247559 (-)
Gene ID: Rep_231_c_0_1019
Type: TC
Location: 1247731 - 1248969 (-)
Type: TC
Location: 1247731 - 1248969 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.