Cluster: Rep_231_CGC20
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_231
- CGC Family ID: CGCFAM_02869
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_231_c_0 | Rep_231_c_0_939 | 1146616 | 1147302 | - | 9.B.18.1.3 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_940 | 1147321 | 1148154 | - | GT2 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_941 | 1148801 | 1149433 | + | GH16_3 |
| pfam | Rep_231_c_0 | Rep_231_c_0_942 | 1149616 | 1150524 | + | ATPgrasp_TupA |
| pfam | Rep_231_c_0 | Rep_231_c_0_943 | 1150617 | 1151822 | + | Transposase_mut |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_944 | 1152046 | 1152858 | - | GT2 |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_945 | 1152868 | 1153671 | - | GT23 |
| pfam | Rep_231_c_0 | Rep_231_c_0_946 | 1153698 | 1154846 | - | Glyco_tran_WbsX |
| TC | Rep_231_c_0 | Rep_231_c_0_947 | 1154876 | 1155934 | - | 9.B.183.1.5 |
Gene ID: Rep_231_c_0_939
Type: TC
Location: 1146616 - 1147302 (-)
Type: TC
Location: 1146616 - 1147302 (-)
Gene ID: Rep_231_c_0_940
Type: CAZyme
Location: 1147321 - 1148154 (-)
Type: CAZyme
Location: 1147321 - 1148154 (-)
Gene ID: Rep_231_c_0_941
Type: CAZyme
Location: 1148801 - 1149433 (+)
Type: CAZyme
Location: 1148801 - 1149433 (+)
Gene ID: Rep_231_c_0_942
Type: pfam
Location: 1149616 - 1150524 (+)
Type: pfam
Location: 1149616 - 1150524 (+)
Gene ID: Rep_231_c_0_943
Type: pfam
Location: 1150617 - 1151822 (+)
Type: pfam
Location: 1150617 - 1151822 (+)
Gene ID: Rep_231_c_0_944
Type: CAZyme
Location: 1152046 - 1152858 (-)
Type: CAZyme
Location: 1152046 - 1152858 (-)
Gene ID: Rep_231_c_0_945
Type: CAZyme
Location: 1152868 - 1153671 (-)
Type: CAZyme
Location: 1152868 - 1153671 (-)
Gene ID: Rep_231_c_0_946
Type: pfam
Location: 1153698 - 1154846 (-)
Type: pfam
Location: 1153698 - 1154846 (-)
Gene ID: Rep_231_c_0_947
Type: TC
Location: 1154876 - 1155934 (-)
Type: TC
Location: 1154876 - 1155934 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_231_c_0_939 | vegetarian > vegan | 1.12597 | 0.00951 |
| Rep_231_c_0_940 | vegetarian > vegan | 1.04057 | 0.00951 |
| Rep_231_c_0_941 | vegetarian > omnivore | 1.45754 | 0.00290 |
| Rep_231_c_0_941 | vegetarian > vegan | 1.76849 | 0.00951 |
| Rep_231_c_0_942 | vegetarian > omnivore | 7.29648 | 0.00290 |
| Rep_231_c_0_943 | vegetarian > vegan | 1.78529 | 0.00951 |