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Cluster: Rep_231_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_231_c_0 Rep_231_c_0_132 136935 138605 - CBM91 | GH43_12
TF Rep_231_c_0 Rep_231_c_0_133 138813 142982 - HTH_AraC | HTH_AraC
CAZyme Rep_231_c_0 Rep_231_c_0_134 143400 144800 + GH5_21
TC Rep_231_c_0 Rep_231_c_0_135 144922 148068 + 1.B.14.6.1
pfam Rep_231_c_0 Rep_231_c_0_136 148089 150053 + SusD_RagB | SusD-like_3
TC Rep_231_c_0 Rep_231_c_0_137 150098 152965 + 1.B.14.6.1
pfam Rep_231_c_0 Rep_231_c_0_138 152988 154805 + SusD_RagB | SusD-like_3
pfam Rep_231_c_0 Rep_231_c_0_139 154826 155875 + BT_3987-like_N | DUF5627
CAZyme Rep_231_c_0 Rep_231_c_0_140 155917 158136 + GH10
Gene ID: Rep_231_c_0_132
Type: CAZyme
Location: 136935 - 138605 (-)
Gene ID: Rep_231_c_0_133
Type: TF
Location: 138813 - 142982 (-)
Gene ID: Rep_231_c_0_134
Type: CAZyme
Location: 143400 - 144800 (+)
Gene ID: Rep_231_c_0_135
Type: TC
Location: 144922 - 148068 (+)
Gene ID: Rep_231_c_0_136
Type: pfam
Location: 148089 - 150053 (+)
Gene ID: Rep_231_c_0_137
Type: TC
Location: 150098 - 152965 (+)
Gene ID: Rep_231_c_0_138
Type: pfam
Location: 152988 - 154805 (+)
Gene ID: Rep_231_c_0_139
Type: pfam
Location: 154826 - 155875 (+)
Gene ID: Rep_231_c_0_140
Type: CAZyme
Location: 155917 - 158136 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_231_c_0_135 vegetarian > vegan 1.06542 0.00951

🧭 Explore Read Mapping of CGC

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