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Cluster: Rep_231_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_231_c_0 Rep_231_c_0_457 573280 575619 + GH20
CAZyme Rep_231_c_0 Rep_231_c_0_458 575662 578823 + GH2
pfam Rep_231_c_0 Rep_231_c_0_459 579257 580480 + DDE_Tnp_1 | DDE_5
TF Rep_231_c_0 Rep_231_c_0_460 580674 581378 - GerE
TC Rep_231_c_0 Rep_231_c_0_461 581399 584002 - 1.B.14.6.14
NULL(UNKNOWN) Rep_231_c_0 Rep_231_c_0_462 584146 584301 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_231_c_0 Rep_231_c_0_463 584368 584910 + PgpA
TC Rep_231_c_0 Rep_231_c_0_464 584985 585653 + 4.F.1.3.2
Gene ID: Rep_231_c_0_457
Type: CAZyme
Location: 573280 - 575619 (+)
Gene ID: Rep_231_c_0_458
Type: CAZyme
Location: 575662 - 578823 (+)
Gene ID: Rep_231_c_0_459
Type: pfam
Location: 579257 - 580480 (+)
Gene ID: Rep_231_c_0_460
Type: TF
Location: 580674 - 581378 (-)
Gene ID: Rep_231_c_0_461
Type: TC
Location: 581399 - 584002 (-)
Gene ID: Rep_231_c_0_462
Type:
Location: 584146 - 584301 (+)
Gene ID: Rep_231_c_0_463
Type: pfam
Location: 584368 - 584910 (+)
Gene ID: Rep_231_c_0_464
Type: TC
Location: 584985 - 585653 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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