Cluster: Rep_231_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_231
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_231_c_0 | Rep_231_c_0_400 | 499880 | 500461 | + | GT4 |
| NULL(UNKNOWN) | Rep_231_c_0 | Rep_231_c_0_401 | 500498 | 501358 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_231_c_0 | Rep_231_c_0_402 | 501512 | 502228 | + | GT26 |
| pfam | Rep_231_c_0 | Rep_231_c_0_403 | 502595 | 504577 | - | OmpA | PD40 | PD40 |
| TC | Rep_231_c_0 | Rep_231_c_0_404 | 504584 | 506740 | - | 3.A.7.7.1 |
Gene ID: Rep_231_c_0_400
Type: CAZyme
Location: 499880 - 500461 (+)
Type: CAZyme
Location: 499880 - 500461 (+)
Gene ID: Rep_231_c_0_401
Type:
Location: 500498 - 501358 (+)
Type:
Location: 500498 - 501358 (+)
Gene ID: Rep_231_c_0_402
Type: CAZyme
Location: 501512 - 502228 (+)
Type: CAZyme
Location: 501512 - 502228 (+)
Gene ID: Rep_231_c_0_403
Type: pfam
Location: 502595 - 504577 (-)
Type: pfam
Location: 502595 - 504577 (-)
Gene ID: Rep_231_c_0_404
Type: TC
Location: 504584 - 506740 (-)
Type: TC
Location: 504584 - 506740 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.