Cluster: Rep_229_CGC41
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_229
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_229_c_38 | Rep_229_c_38_9 | 10971 | 14111 | + | GH2 |
| CAZyme | Rep_229_c_38 | Rep_229_c_38_10 | 14182 | 15630 | + | GH29 |
| NULL(UNKNOWN) | Rep_229_c_38 | Rep_229_c_38_11 | 15955 | 16314 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_229_c_38 | Rep_229_c_38_12 | 16477 | 16719 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_229_c_38 | Rep_229_c_38_13 | 16894 | 17955 | - | 2.A.72.1.3 |
| TC | Rep_229_c_38 | Rep_229_c_38_14 | 17976 | 18458 | - | 2.A.72.1.3 |
| TC | Rep_229_c_38 | Rep_229_c_38_15 | 18983 | 20599 | - | 8.A.46.1.1 |
| TC | Rep_229_c_38 | Rep_229_c_38_16 | 20612 | 23311 | - | 1.B.14.6.2 |
| NULL(UNKNOWN) | Rep_229_c_38 | Rep_229_c_38_17 | 23771 | 23908 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_229_c_38 | Rep_229_c_38_18 | 24127 | 26943 | + | 1.B.14.12.3 |
Gene ID: Rep_229_c_38_9
Type: CAZyme
Location: 10971 - 14111 (+)
Type: CAZyme
Location: 10971 - 14111 (+)
Gene ID: Rep_229_c_38_10
Type: CAZyme
Location: 14182 - 15630 (+)
Type: CAZyme
Location: 14182 - 15630 (+)
Gene ID: Rep_229_c_38_11
Type:
Location: 15955 - 16314 (+)
Type:
Location: 15955 - 16314 (+)
Gene ID: Rep_229_c_38_12
Type:
Location: 16477 - 16719 (+)
Type:
Location: 16477 - 16719 (+)
Gene ID: Rep_229_c_38_13
Type: TC
Location: 16894 - 17955 (-)
Type: TC
Location: 16894 - 17955 (-)
Gene ID: Rep_229_c_38_14
Type: TC
Location: 17976 - 18458 (-)
Type: TC
Location: 17976 - 18458 (-)
Gene ID: Rep_229_c_38_15
Type: TC
Location: 18983 - 20599 (-)
Type: TC
Location: 18983 - 20599 (-)
Gene ID: Rep_229_c_38_16
Type: TC
Location: 20612 - 23311 (-)
Type: TC
Location: 20612 - 23311 (-)
Gene ID: Rep_229_c_38_17
Type:
Location: 23771 - 23908 (+)
Type:
Location: 23771 - 23908 (+)
Gene ID: Rep_229_c_38_18
Type: TC
Location: 24127 - 26943 (+)
Type: TC
Location: 24127 - 26943 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_229_c_38_15 | vegetarian > omnivore | 1.44632 | 0.02010 |
| Rep_229_c_38_15 | vegetarian > vegan | 1.75007 | 0.00667 |
| Rep_229_c_38_16 | vegetarian > omnivore | 1.89725 | 0.02010 |
| Rep_229_c_38_16 | vegetarian > vegan | 2.60243 | 0.00667 |
| Rep_229_c_38_17 | vegetarian > vegan | 1.15207 | 0.00667 |