Cluster: Rep_2297_CGC47
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2297
- CGC Family ID: CGCFAM_03012
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2297_c_16 | Rep_2297_c_16_20 | 18662 | 20119 | - | GH32 |
| CAZyme | Rep_2297_c_16 | Rep_2297_c_16_21 | 20109 | 22595 | - | GH116 |
| pfam | Rep_2297_c_16 | Rep_2297_c_16_22 | 23144 | 24571 | - | DEDD_Tnp_IS110 | Transposase_20 |
| TC | Rep_2297_c_16 | Rep_2297_c_16_23 | 24711 | 25595 | - | 3.A.1.1.20 |
| TC | Rep_2297_c_16 | Rep_2297_c_16_24 | 25588 | 26493 | - | 3.A.1.1.7 |
| TC | Rep_2297_c_16 | Rep_2297_c_16_25 | 26514 | 27791 | - | 3.A.1.1.40 |
Gene ID: Rep_2297_c_16_20
Type: CAZyme
Location: 18662 - 20119 (-)
Type: CAZyme
Location: 18662 - 20119 (-)
Gene ID: Rep_2297_c_16_21
Type: CAZyme
Location: 20109 - 22595 (-)
Type: CAZyme
Location: 20109 - 22595 (-)
Gene ID: Rep_2297_c_16_22
Type: pfam
Location: 23144 - 24571 (-)
Type: pfam
Location: 23144 - 24571 (-)
Gene ID: Rep_2297_c_16_23
Type: TC
Location: 24711 - 25595 (-)
Type: TC
Location: 24711 - 25595 (-)
Gene ID: Rep_2297_c_16_24
Type: TC
Location: 25588 - 26493 (-)
Type: TC
Location: 25588 - 26493 (-)
Gene ID: Rep_2297_c_16_25
Type: TC
Location: 26514 - 27791 (-)
Type: TC
Location: 26514 - 27791 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Ruminococcus_B
Species
Ruminococcus_B gnavus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.