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Cluster: Rep_2297_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2297_c_15 Rep_2297_c_15_20 17635 19137 - GH51_1
TC Rep_2297_c_15 Rep_2297_c_15_21 19130 19765 - 9.B.28.1.2
CAZyme Rep_2297_c_15 Rep_2297_c_15_22 19791 21893 - GH3
TC Rep_2297_c_15 Rep_2297_c_15_23 21915 22811 - 3.A.1.1.29
TC Rep_2297_c_15 Rep_2297_c_15_24 22824 23780 - 3.A.1.1.29
TC Rep_2297_c_15 Rep_2297_c_15_25 23849 25510 - 3.A.1.1.29
TF Rep_2297_c_15 Rep_2297_c_15_26 25608 27230 - HTH_AraC | HTH_AraC
TC Rep_2297_c_15 Rep_2297_c_15_27 27235 29010 - 9.B.33.1.1
CAZyme Rep_2297_c_15 Rep_2297_c_15_28 28970 30853 - CE20 | CE20
CAZyme Rep_2297_c_15 Rep_2297_c_15_29 30879 32063 - GH10
Gene ID: Rep_2297_c_15_20
Type: CAZyme
Location: 17635 - 19137 (-)
Gene ID: Rep_2297_c_15_21
Type: TC
Location: 19130 - 19765 (-)
Gene ID: Rep_2297_c_15_22
Type: CAZyme
Location: 19791 - 21893 (-)
Gene ID: Rep_2297_c_15_23
Type: TC
Location: 21915 - 22811 (-)
Gene ID: Rep_2297_c_15_24
Type: TC
Location: 22824 - 23780 (-)
Gene ID: Rep_2297_c_15_25
Type: TC
Location: 23849 - 25510 (-)
Gene ID: Rep_2297_c_15_26
Type: TF
Location: 25608 - 27230 (-)
Gene ID: Rep_2297_c_15_27
Type: TC
Location: 27235 - 29010 (-)
Gene ID: Rep_2297_c_15_28
Type: CAZyme
Location: 28970 - 30853 (-)
Gene ID: Rep_2297_c_15_29
Type: CAZyme
Location: 30879 - 32063 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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