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Cluster: Rep_2297_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2297_c_13 Rep_2297_c_13_9 7857 10298 - GH3
TC Rep_2297_c_13 Rep_2297_c_13_10 10381 11229 - 3.A.1.1.2
TC Rep_2297_c_13 Rep_2297_c_13_11 11229 12185 - 3.A.1.1.4
NULL(UNKNOWN) Rep_2297_c_13 Rep_2297_c_13_12 12276 13655 - NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_2297_c_13 Rep_2297_c_13_13 13797 14537 + HTH_AraC | HTH_AraC
CAZyme Rep_2297_c_13 Rep_2297_c_13_14 14642 17341 - GH94
CAZyme Rep_2297_c_13 Rep_2297_c_13_15 17364 19778 - GH94
pfam Rep_2297_c_13 Rep_2297_c_13_16 20307 20720 - TnpV
TC Rep_2297_c_13 Rep_2297_c_13_17 21111 21677 + 2.A.107.1.2
TC Rep_2297_c_13 Rep_2297_c_13_18 21748 24078 - 9.A.8.1.6
Gene ID: Rep_2297_c_13_9
Type: CAZyme
Location: 7857 - 10298 (-)
Gene ID: Rep_2297_c_13_10
Type: TC
Location: 10381 - 11229 (-)
Gene ID: Rep_2297_c_13_11
Type: TC
Location: 11229 - 12185 (-)
Gene ID: Rep_2297_c_13_12
Type:
Location: 12276 - 13655 (-)
Gene ID: Rep_2297_c_13_13
Type: TF
Location: 13797 - 14537 (+)
Gene ID: Rep_2297_c_13_14
Type: CAZyme
Location: 14642 - 17341 (-)
Gene ID: Rep_2297_c_13_15
Type: CAZyme
Location: 17364 - 19778 (-)
Gene ID: Rep_2297_c_13_16
Type: pfam
Location: 20307 - 20720 (-)
Gene ID: Rep_2297_c_13_17
Type: TC
Location: 21111 - 21677 (+)
Gene ID: Rep_2297_c_13_18
Type: TC
Location: 21748 - 24078 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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