Cluster: Rep_2297_CGC42
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: Rep_2297
- CGC Family ID: CGCFAM_00174
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2297_c_12 | Rep_2297_c_12_6 | 5979 | 6848 | + | 1.A.35.3.2 |
| NULL(UNKNOWN) | Rep_2297_c_12 | Rep_2297_c_12_7 | 6841 | 6963 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2297_c_12 | Rep_2297_c_12_8 | 7472 | 8674 | + | 2.A.23.2.2 |
| TF | Rep_2297_c_12 | Rep_2297_c_12_9 | 8810 | 9769 | + | LacI |
| TC | Rep_2297_c_12 | Rep_2297_c_12_10 | 9891 | 11834 | + | 4.A.1.2.1 |
| CAZyme | Rep_2297_c_12 | Rep_2297_c_12_11 | 11846 | 13252 | + | GH32 |
| TC | Rep_2297_c_12 | Rep_2297_c_12_12 | 13328 | 14659 | - | 2.A.40.2.1 |
Gene ID: Rep_2297_c_12_6
Type: TC
Location: 5979 - 6848 (+)
Type: TC
Location: 5979 - 6848 (+)
Gene ID: Rep_2297_c_12_7
Type:
Location: 6841 - 6963 (-)
Type:
Location: 6841 - 6963 (-)
Gene ID: Rep_2297_c_12_8
Type: TC
Location: 7472 - 8674 (+)
Type: TC
Location: 7472 - 8674 (+)
Gene ID: Rep_2297_c_12_9
Type: TF
Location: 8810 - 9769 (+)
Type: TF
Location: 8810 - 9769 (+)
Gene ID: Rep_2297_c_12_10
Type: TC
Location: 9891 - 11834 (+)
Type: TC
Location: 9891 - 11834 (+)
Gene ID: Rep_2297_c_12_11
Type: CAZyme
Location: 11846 - 13252 (+)
Type: CAZyme
Location: 11846 - 13252 (+)
Gene ID: Rep_2297_c_12_12
Type: TC
Location: 13328 - 14659 (-)
Type: TC
Location: 13328 - 14659 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Ruminococcus_B
Species
Ruminococcus_B gnavus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.