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Cluster: Rep_2297_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2297_c_6 Rep_2297_c_6_39 51164 52510 + 2.A.66.1.33
pfam Rep_2297_c_6 Rep_2297_c_6_40 52869 53978 - DUF3810
TC Rep_2297_c_6 Rep_2297_c_6_41 54184 56139 + 8.A.59.2.1
TF Rep_2297_c_6 Rep_2297_c_6_42 56114 57637 + HTH_AraC | HTH_AraC
TC Rep_2297_c_6 Rep_2297_c_6_43 57689 59041 - 3.A.1.1.41
TC Rep_2297_c_6 Rep_2297_c_6_44 59268 60173 + 3.A.1.1.30
TC Rep_2297_c_6 Rep_2297_c_6_45 60185 61540 + 3.A.1.1.11
CAZyme Rep_2297_c_6 Rep_2297_c_6_46 61564 62724 + CBM13 | GH16_3
CAZyme Rep_2297_c_6 Rep_2297_c_6_47 62744 64030 + GH177
CAZyme Rep_2297_c_6 Rep_2297_c_6_48 64036 65673 + GH123
pfam Rep_2297_c_6 Rep_2297_c_6_49 66073 67113 + 2-Hacid_dh_C | DUF772
TC Rep_2297_c_6 Rep_2297_c_6_50 67260 68552 + 2.A.1.24.4
Gene ID: Rep_2297_c_6_39
Type: TC
Location: 51164 - 52510 (+)
Gene ID: Rep_2297_c_6_40
Type: pfam
Location: 52869 - 53978 (-)
Gene ID: Rep_2297_c_6_41
Type: TC
Location: 54184 - 56139 (+)
Gene ID: Rep_2297_c_6_42
Type: TF
Location: 56114 - 57637 (+)
Gene ID: Rep_2297_c_6_43
Type: TC
Location: 57689 - 59041 (-)
Gene ID: Rep_2297_c_6_44
Type: TC
Location: 59268 - 60173 (+)
Gene ID: Rep_2297_c_6_45
Type: TC
Location: 60185 - 61540 (+)
Gene ID: Rep_2297_c_6_46
Type: CAZyme
Location: 61564 - 62724 (+)
Gene ID: Rep_2297_c_6_47
Type: CAZyme
Location: 62744 - 64030 (+)
Gene ID: Rep_2297_c_6_48
Type: CAZyme
Location: 64036 - 65673 (+)
Gene ID: Rep_2297_c_6_49
Type: pfam
Location: 66073 - 67113 (+)
Gene ID: Rep_2297_c_6_50
Type: TC
Location: 67260 - 68552 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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