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Cluster: Rep_2297_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2297_c_6 Rep_2297_c_6_22 26978 27859 + 3.A.1.1.37
TC Rep_2297_c_6 Rep_2297_c_6_23 27862 28689 + 3.A.1.1.46
CAZyme Rep_2297_c_6 Rep_2297_c_6_24 28673 29962 + GH175
CAZyme Rep_2297_c_6 Rep_2297_c_6_25 29976 31523 + CBM91 | GH43_11
pfam Rep_2297_c_6 Rep_2297_c_6_26 31527 33071 + Cellulase | Apiosidase | DUF5060 | DUF5605
pfam Rep_2297_c_6 Rep_2297_c_6_27 33078 33776 + Asp_Glu_race
CAZyme Rep_2297_c_6 Rep_2297_c_6_28 33770 37084 + GH127
pfam Rep_2297_c_6 Rep_2297_c_6_29 37097 37897 + BKACE
CAZyme Rep_2297_c_6 Rep_2297_c_6_30 37902 40547 + CBM67 | GH78
TC Rep_2297_c_6 Rep_2297_c_6_31 40585 42357 + 8.A.59.2.1
Gene ID: Rep_2297_c_6_22
Type: TC
Location: 26978 - 27859 (+)
Gene ID: Rep_2297_c_6_23
Type: TC
Location: 27862 - 28689 (+)
Gene ID: Rep_2297_c_6_24
Type: CAZyme
Location: 28673 - 29962 (+)
Gene ID: Rep_2297_c_6_25
Type: CAZyme
Location: 29976 - 31523 (+)
Gene ID: Rep_2297_c_6_26
Type: pfam
Location: 31527 - 33071 (+)
Gene ID: Rep_2297_c_6_27
Type: pfam
Location: 33078 - 33776 (+)
Gene ID: Rep_2297_c_6_28
Type: CAZyme
Location: 33770 - 37084 (+)
Gene ID: Rep_2297_c_6_29
Type: pfam
Location: 37097 - 37897 (+)
Gene ID: Rep_2297_c_6_30
Type: CAZyme
Location: 37902 - 40547 (+)
Gene ID: Rep_2297_c_6_31
Type: TC
Location: 40585 - 42357 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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