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Cluster: Rep_2297_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2297_c_6 Rep_2297_c_6_9 9436 10065 - 3.A.2.3.2
TC Rep_2297_c_6 Rep_2297_c_6_10 10078 11511 - 3.A.2.3.2
TC Rep_2297_c_6 Rep_2297_c_6_11 11527 13293 - 3.A.2.3.2
pfam Rep_2297_c_6 Rep_2297_c_6_12 13286 13873 - vATP-synt_E
pfam Rep_2297_c_6 Rep_2297_c_6_13 13903 14205 - ATP-synt_F
TC Rep_2297_c_6 Rep_2297_c_6_14 14213 14647 - 3.A.2.2.1
TC Rep_2297_c_6 Rep_2297_c_6_15 14663 16612 - 3.A.2.3.3
pfam Rep_2297_c_6 Rep_2297_c_6_16 16612 17655 - vATP-synt_AC39
NULL(UNKNOWN) Rep_2297_c_6 Rep_2297_c_6_17 17659 17970 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2297_c_6 Rep_2297_c_6_18 18294 23546 + CBM32
Gene ID: Rep_2297_c_6_9
Type: TC
Location: 9436 - 10065 (-)
Gene ID: Rep_2297_c_6_10
Type: TC
Location: 10078 - 11511 (-)
Gene ID: Rep_2297_c_6_11
Type: TC
Location: 11527 - 13293 (-)
Gene ID: Rep_2297_c_6_12
Type: pfam
Location: 13286 - 13873 (-)
Gene ID: Rep_2297_c_6_13
Type: pfam
Location: 13903 - 14205 (-)
Gene ID: Rep_2297_c_6_14
Type: TC
Location: 14213 - 14647 (-)
Gene ID: Rep_2297_c_6_15
Type: TC
Location: 14663 - 16612 (-)
Gene ID: Rep_2297_c_6_16
Type: pfam
Location: 16612 - 17655 (-)
Gene ID: Rep_2297_c_6_17
Type:
Location: 17659 - 17970 (-)
Gene ID: Rep_2297_c_6_18
Type: CAZyme
Location: 18294 - 23546 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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