Cluster: Rep_2297_CGC32
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 9
- Substrate:
- Genome ID: Rep_2297
- CGC Family ID: CGCFAM_00658
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2297_c_5 | Rep_2297_c_5_68 | 66207 | 67244 | - | 9.B.97.6.2 |
| NULL(UNKNOWN) | Rep_2297_c_5 | Rep_2297_c_5_69 | 67296 | 68600 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2297_c_5 | Rep_2297_c_5_70 | 68642 | 70162 | - | 2.A.66.1.40 |
| pfam | Rep_2297_c_5 | Rep_2297_c_5_71 | 70137 | 71162 | - | PS_pyruv_trans |
| CAZyme | Rep_2297_c_5 | Rep_2297_c_5_72 | 71165 | 72109 | - | GT2 |
| CAZyme | Rep_2297_c_5 | Rep_2297_c_5_73 | 72123 | 73301 | - | GT4 |
| CAZyme | Rep_2297_c_5 | Rep_2297_c_5_74 | 73294 | 74463 | - | GT4 |
| CAZyme | Rep_2297_c_5 | Rep_2297_c_5_75 | 74460 | 75476 | - | GT2 |
| CAZyme | Rep_2297_c_5 | Rep_2297_c_5_76 | 75486 | 76619 | - | GT4 |
| CAZyme | Rep_2297_c_5 | Rep_2297_c_5_77 | 76679 | 77479 | - | GT32 |
| CAZyme | Rep_2297_c_5 | Rep_2297_c_5_78 | 77476 | 78672 | - | GT4 |
| pfam | Rep_2297_c_5 | Rep_2297_c_5_79 | 78691 | 79833 | - | EpsG |
| CAZyme | Rep_2297_c_5 | Rep_2297_c_5_80 | 79875 | 80702 | - | GT2 |
| CAZyme | Rep_2297_c_5 | Rep_2297_c_5_81 | 80690 | 81790 | - | GT4 |
| pfam | Rep_2297_c_5 | Rep_2297_c_5_82 | 81787 | 82395 | - | PglD_N |
| TC | Rep_2297_c_5 | Rep_2297_c_5_83 | 82388 | 83029 | - | 9.B.18.1.2 |
| STP | Rep_2297_c_5 | Rep_2297_c_5_84 | 83072 | 84325 | - | Aminotran_1_2 |
| TC | Rep_2297_c_5 | Rep_2297_c_5_85 | 84369 | 86441 | - | 9.B.18.2.1 |
Gene ID: Rep_2297_c_5_68
Type: TC
Location: 66207 - 67244 (-)
Type: TC
Location: 66207 - 67244 (-)
Gene ID: Rep_2297_c_5_69
Type:
Location: 67296 - 68600 (-)
Type:
Location: 67296 - 68600 (-)
Gene ID: Rep_2297_c_5_70
Type: TC
Location: 68642 - 70162 (-)
Type: TC
Location: 68642 - 70162 (-)
Gene ID: Rep_2297_c_5_71
Type: pfam
Location: 70137 - 71162 (-)
Type: pfam
Location: 70137 - 71162 (-)
Gene ID: Rep_2297_c_5_72
Type: CAZyme
Location: 71165 - 72109 (-)
Type: CAZyme
Location: 71165 - 72109 (-)
Gene ID: Rep_2297_c_5_73
Type: CAZyme
Location: 72123 - 73301 (-)
Type: CAZyme
Location: 72123 - 73301 (-)
Gene ID: Rep_2297_c_5_74
Type: CAZyme
Location: 73294 - 74463 (-)
Type: CAZyme
Location: 73294 - 74463 (-)
Gene ID: Rep_2297_c_5_75
Type: CAZyme
Location: 74460 - 75476 (-)
Type: CAZyme
Location: 74460 - 75476 (-)
Gene ID: Rep_2297_c_5_76
Type: CAZyme
Location: 75486 - 76619 (-)
Type: CAZyme
Location: 75486 - 76619 (-)
Gene ID: Rep_2297_c_5_77
Type: CAZyme
Location: 76679 - 77479 (-)
Type: CAZyme
Location: 76679 - 77479 (-)
Gene ID: Rep_2297_c_5_78
Type: CAZyme
Location: 77476 - 78672 (-)
Type: CAZyme
Location: 77476 - 78672 (-)
Gene ID: Rep_2297_c_5_79
Type: pfam
Location: 78691 - 79833 (-)
Type: pfam
Location: 78691 - 79833 (-)
Gene ID: Rep_2297_c_5_80
Type: CAZyme
Location: 79875 - 80702 (-)
Type: CAZyme
Location: 79875 - 80702 (-)
Gene ID: Rep_2297_c_5_81
Type: CAZyme
Location: 80690 - 81790 (-)
Type: CAZyme
Location: 80690 - 81790 (-)
Gene ID: Rep_2297_c_5_82
Type: pfam
Location: 81787 - 82395 (-)
Type: pfam
Location: 81787 - 82395 (-)
Gene ID: Rep_2297_c_5_83
Type: TC
Location: 82388 - 83029 (-)
Type: TC
Location: 82388 - 83029 (-)
Gene ID: Rep_2297_c_5_84
Type: STP
Location: 83072 - 84325 (-)
Type: STP
Location: 83072 - 84325 (-)
Gene ID: Rep_2297_c_5_85
Type: TC
Location: 84369 - 86441 (-)
Type: TC
Location: 84369 - 86441 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Ruminococcus_B
Species
Ruminococcus_B gnavus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.