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Cluster: Rep_2297_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2297_c_4 Rep_2297_c_4_155 166674 173243 - GH95
CAZyme Rep_2297_c_4 Rep_2297_c_4_156 173475 174944 - GH1
TC Rep_2297_c_4 Rep_2297_c_4_157 174961 176850 - 4.A.1.2.6
pfam Rep_2297_c_4 Rep_2297_c_4_158 176960 177805 - PRD | PRD | CAT_RBD
pfam Rep_2297_c_4 Rep_2297_c_4_159 177961 178617 - ABC2_membrane_5
TC Rep_2297_c_4 Rep_2297_c_4_160 178614 179477 - 3.A.1.149.1
TF Rep_2297_c_4 Rep_2297_c_4_161 179477 179857 - GntR
pfam Rep_2297_c_4 Rep_2297_c_4_162 180009 181286 - Enolase_C | Enolase_N | MR_MLE_C
TC Rep_2297_c_4 Rep_2297_c_4_163 181400 182242 + 2.A.115.1.5
TC Rep_2297_c_4 Rep_2297_c_4_164 182272 184464 + 3.A.7.7.1
Gene ID: Rep_2297_c_4_155
Type: CAZyme
Location: 166674 - 173243 (-)
Gene ID: Rep_2297_c_4_156
Type: CAZyme
Location: 173475 - 174944 (-)
Gene ID: Rep_2297_c_4_157
Type: TC
Location: 174961 - 176850 (-)
Gene ID: Rep_2297_c_4_158
Type: pfam
Location: 176960 - 177805 (-)
Gene ID: Rep_2297_c_4_159
Type: pfam
Location: 177961 - 178617 (-)
Gene ID: Rep_2297_c_4_160
Type: TC
Location: 178614 - 179477 (-)
Gene ID: Rep_2297_c_4_161
Type: TF
Location: 179477 - 179857 (-)
Gene ID: Rep_2297_c_4_162
Type: pfam
Location: 180009 - 181286 (-)
Gene ID: Rep_2297_c_4_163
Type: TC
Location: 181400 - 182242 (+)
Gene ID: Rep_2297_c_4_164
Type: TC
Location: 182272 - 184464 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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