Cluster: Rep_2297_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2297
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2297_c_0 | Rep_2297_c_0_149 | 141940 | 142827 | + | 1.A.23.2.1 |
| CAZyme | Rep_2297_c_0 | Rep_2297_c_0_150 | 143065 | 148140 | + | CBM32 |
| pfam | Rep_2297_c_0 | Rep_2297_c_0_151 | 148309 | 149784 | + | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| TC | Rep_2297_c_0 | Rep_2297_c_0_152 | 149799 | 152027 | + | 3.A.11.3.1 |
Gene ID: Rep_2297_c_0_149
Type: TC
Location: 141940 - 142827 (+)
Type: TC
Location: 141940 - 142827 (+)
Gene ID: Rep_2297_c_0_150
Type: CAZyme
Location: 143065 - 148140 (+)
Type: CAZyme
Location: 143065 - 148140 (+)
Gene ID: Rep_2297_c_0_151
Type: pfam
Location: 148309 - 149784 (+)
Type: pfam
Location: 148309 - 149784 (+)
Gene ID: Rep_2297_c_0_152
Type: TC
Location: 149799 - 152027 (+)
Type: TC
Location: 149799 - 152027 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Ruminococcus_B
Species
Ruminococcus_B gnavus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.