Cluster: Rep_2297_CGC24
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_2297
- CGC Family ID: CGCFAM_00466
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2297_c_3 | Rep_2297_c_3_301 | 305518 | 306036 | - | GH3 |
| CAZyme | Rep_2297_c_3 | Rep_2297_c_3_302 | 306102 | 307673 | - | GH35 |
| NULL(UNKNOWN) | Rep_2297_c_3 | Rep_2297_c_3_303 | 307933 | 308073 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2297_c_3 | Rep_2297_c_3_304 | 308078 | 310552 | - | GH3 |
| sulfatase | Rep_2297_c_3 | Rep_2297_c_3_305 | 310612 | 312333 | - | S1_7 |
| STP | Rep_2297_c_3 | Rep_2297_c_3_306 | 312511 | 314577 | - | Pyr_redox_2 |
| CAZyme | Rep_2297_c_3 | Rep_2297_c_3_307 | 314604 | 316859 | - | GH3 |
| TC | Rep_2297_c_3 | Rep_2297_c_3_308 | 316883 | 318259 | - | 2.A.2.1.1 |
| pfam | Rep_2297_c_3 | Rep_2297_c_3_309 | 318363 | 319175 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | Rep_2297_c_3 | Rep_2297_c_3_310 | 319281 | 321767 | - | CBM67 | GH78 |
| NULL(UNKNOWN) | Rep_2297_c_3 | Rep_2297_c_3_311 | 321739 | 321909 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2297_c_3 | Rep_2297_c_3_312 | 321924 | 324719 | - | CBM67 | GH78 |
| TC | Rep_2297_c_3 | Rep_2297_c_3_313 | 324744 | 326096 | - | 2.A.2.3.6 |
| CAZyme | Rep_2297_c_3 | Rep_2297_c_3_314 | 326106 | 328370 | - | GH3 |
Gene ID: Rep_2297_c_3_301
Type: CAZyme
Location: 305518 - 306036 (-)
Type: CAZyme
Location: 305518 - 306036 (-)
Gene ID: Rep_2297_c_3_302
Type: CAZyme
Location: 306102 - 307673 (-)
Type: CAZyme
Location: 306102 - 307673 (-)
Gene ID: Rep_2297_c_3_303
Type:
Location: 307933 - 308073 (-)
Type:
Location: 307933 - 308073 (-)
Gene ID: Rep_2297_c_3_304
Type: CAZyme
Location: 308078 - 310552 (-)
Type: CAZyme
Location: 308078 - 310552 (-)
Gene ID: Rep_2297_c_3_305
Type: sulfatase
Location: 310612 - 312333 (-)
Type: sulfatase
Location: 310612 - 312333 (-)
Gene ID: Rep_2297_c_3_306
Type: STP
Location: 312511 - 314577 (-)
Type: STP
Location: 312511 - 314577 (-)
Gene ID: Rep_2297_c_3_307
Type: CAZyme
Location: 314604 - 316859 (-)
Type: CAZyme
Location: 314604 - 316859 (-)
Gene ID: Rep_2297_c_3_308
Type: TC
Location: 316883 - 318259 (-)
Type: TC
Location: 316883 - 318259 (-)
Gene ID: Rep_2297_c_3_309
Type: pfam
Location: 318363 - 319175 (-)
Type: pfam
Location: 318363 - 319175 (-)
Gene ID: Rep_2297_c_3_310
Type: CAZyme
Location: 319281 - 321767 (-)
Type: CAZyme
Location: 319281 - 321767 (-)
Gene ID: Rep_2297_c_3_311
Type:
Location: 321739 - 321909 (-)
Type:
Location: 321739 - 321909 (-)
Gene ID: Rep_2297_c_3_312
Type: CAZyme
Location: 321924 - 324719 (-)
Type: CAZyme
Location: 321924 - 324719 (-)
Gene ID: Rep_2297_c_3_313
Type: TC
Location: 324744 - 326096 (-)
Type: TC
Location: 324744 - 326096 (-)
Gene ID: Rep_2297_c_3_314
Type: CAZyme
Location: 326106 - 328370 (-)
Type: CAZyme
Location: 326106 - 328370 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Ruminococcus_B
Species
Ruminococcus_B gnavus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.