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Cluster: Rep_2297_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2297_c_0 Rep_2297_c_0_101 99868 102030 + GH112
TF Rep_2297_c_0 Rep_2297_c_0_102 102126 102956 - HTH_AraC
TF Rep_2297_c_0 Rep_2297_c_0_103 103012 104040 - LacI
TC Rep_2297_c_0 Rep_2297_c_0_104 104290 105228 + 3.A.1.1.10
TC Rep_2297_c_0 Rep_2297_c_0_105 105240 106136 + 3.A.1.1.29
STP Rep_2297_c_0 Rep_2297_c_0_106 106156 107841 + SBP_bac_1
CAZyme Rep_2297_c_0 Rep_2297_c_0_107 107850 109316 + GH32
TC Rep_2297_c_0 Rep_2297_c_0_108 109369 109923 - 2.A.51.1.6
TC Rep_2297_c_0 Rep_2297_c_0_109 109920 110486 - 2.A.51.1.1
Gene ID: Rep_2297_c_0_101
Type: CAZyme
Location: 99868 - 102030 (+)
Gene ID: Rep_2297_c_0_102
Type: TF
Location: 102126 - 102956 (-)
Gene ID: Rep_2297_c_0_103
Type: TF
Location: 103012 - 104040 (-)
Gene ID: Rep_2297_c_0_104
Type: TC
Location: 104290 - 105228 (+)
Gene ID: Rep_2297_c_0_105
Type: TC
Location: 105240 - 106136 (+)
Gene ID: Rep_2297_c_0_106
Type: STP
Location: 106156 - 107841 (+)
Gene ID: Rep_2297_c_0_107
Type: CAZyme
Location: 107850 - 109316 (+)
Gene ID: Rep_2297_c_0_108
Type: TC
Location: 109369 - 109923 (-)
Gene ID: Rep_2297_c_0_109
Type: TC
Location: 109920 - 110486 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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