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Cluster: Rep_2297_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2297_c_2 Rep_2297_c_2_117 121350 123098 + 9.B.33.1.1
TF Rep_2297_c_2 Rep_2297_c_2_118 123086 124156 + HTH_AraC | HTH_AraC
STP Rep_2297_c_2 Rep_2297_c_2_119 124153 125409 + SBP_bac_1
TC Rep_2297_c_2 Rep_2297_c_2_120 125635 126960 + 3.A.1.1.47
TC Rep_2297_c_2 Rep_2297_c_2_121 127049 127969 + 3.A.1.1.47
TC Rep_2297_c_2 Rep_2297_c_2_122 127969 128832 + 3.A.1.1.47
pfam Rep_2297_c_2 Rep_2297_c_2_123 128848 130107 + GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
CAZyme Rep_2297_c_2 Rep_2297_c_2_124 130110 131417 + GH29
Gene ID: Rep_2297_c_2_117
Type: TC
Location: 121350 - 123098 (+)
Gene ID: Rep_2297_c_2_118
Type: TF
Location: 123086 - 124156 (+)
Gene ID: Rep_2297_c_2_119
Type: STP
Location: 124153 - 125409 (+)
Gene ID: Rep_2297_c_2_120
Type: TC
Location: 125635 - 126960 (+)
Gene ID: Rep_2297_c_2_121
Type: TC
Location: 127049 - 127969 (+)
Gene ID: Rep_2297_c_2_122
Type: TC
Location: 127969 - 128832 (+)
Gene ID: Rep_2297_c_2_123
Type: pfam
Location: 128848 - 130107 (+)
Gene ID: Rep_2297_c_2_124
Type: CAZyme
Location: 130110 - 131417 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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