Cluster: Rep_2297_CGC17
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2297
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2297_c_2 | Rep_2297_c_2_18 | 19308 | 20309 | + | 3.A.1.2.19 |
| CAZyme | Rep_2297_c_2 | Rep_2297_c_2_19 | 20321 | 22009 | + | GH13_11 |
| pfam | Rep_2297_c_2 | Rep_2297_c_2_20 | 22025 | 22579 | + | DUF5662 |
| TC | Rep_2297_c_2 | Rep_2297_c_2_21 | 22584 | 23246 | - | 2.A.115.2.12 |
| pfam | Rep_2297_c_2 | Rep_2297_c_2_22 | 23261 | 23740 | - | LuxS |
| pfam | Rep_2297_c_2 | Rep_2297_c_2_23 | 23901 | 24515 | + | His_Phos_1 |
| TC | Rep_2297_c_2 | Rep_2297_c_2_24 | 24572 | 26206 | - | 3.A.1.121.4 |
| pfam | Rep_2297_c_2 | Rep_2297_c_2_25 | 26410 | 27267 | + | Patatin | DUF6363 |
| pfam | Rep_2297_c_2 | Rep_2297_c_2_26 | 27336 | 29444 | + | PP_kinase | PP_kinase_N | PP_kinase_C | PP_kinase_C_1 |
| TC | Rep_2297_c_2 | Rep_2297_c_2_27 | 29476 | 31500 | + | 3.A.7.7.1 |
| NULL(UNKNOWN) | Rep_2297_c_2 | Rep_2297_c_2_28 | 31504 | 32169 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_2297_c_2 | Rep_2297_c_2_29 | 32184 | 33062 | + | NAD_binding_2 | F420_oxidored | NAD_binding_11 |
| TC | Rep_2297_c_2 | Rep_2297_c_2_30 | 33243 | 33941 | + | 3.A.1.128.3 |
| TC | Rep_2297_c_2 | Rep_2297_c_2_31 | 33938 | 35512 | + | 3.A.1.128.3 |
Gene ID: Rep_2297_c_2_18
Type: TC
Location: 19308 - 20309 (+)
Type: TC
Location: 19308 - 20309 (+)
Gene ID: Rep_2297_c_2_19
Type: CAZyme
Location: 20321 - 22009 (+)
Type: CAZyme
Location: 20321 - 22009 (+)
Gene ID: Rep_2297_c_2_20
Type: pfam
Location: 22025 - 22579 (+)
Type: pfam
Location: 22025 - 22579 (+)
Gene ID: Rep_2297_c_2_21
Type: TC
Location: 22584 - 23246 (-)
Type: TC
Location: 22584 - 23246 (-)
Gene ID: Rep_2297_c_2_22
Type: pfam
Location: 23261 - 23740 (-)
Type: pfam
Location: 23261 - 23740 (-)
Gene ID: Rep_2297_c_2_23
Type: pfam
Location: 23901 - 24515 (+)
Type: pfam
Location: 23901 - 24515 (+)
Gene ID: Rep_2297_c_2_24
Type: TC
Location: 24572 - 26206 (-)
Type: TC
Location: 24572 - 26206 (-)
Gene ID: Rep_2297_c_2_25
Type: pfam
Location: 26410 - 27267 (+)
Type: pfam
Location: 26410 - 27267 (+)
Gene ID: Rep_2297_c_2_26
Type: pfam
Location: 27336 - 29444 (+)
Type: pfam
Location: 27336 - 29444 (+)
Gene ID: Rep_2297_c_2_27
Type: TC
Location: 29476 - 31500 (+)
Type: TC
Location: 29476 - 31500 (+)
Gene ID: Rep_2297_c_2_28
Type:
Location: 31504 - 32169 (+)
Type:
Location: 31504 - 32169 (+)
Gene ID: Rep_2297_c_2_29
Type: pfam
Location: 32184 - 33062 (+)
Type: pfam
Location: 32184 - 33062 (+)
Gene ID: Rep_2297_c_2_30
Type: TC
Location: 33243 - 33941 (+)
Type: TC
Location: 33243 - 33941 (+)
Gene ID: Rep_2297_c_2_31
Type: TC
Location: 33938 - 35512 (+)
Type: TC
Location: 33938 - 35512 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Ruminococcus_B
Species
Ruminococcus_B gnavus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.