Cluster: Rep_2297_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: host glycan/beta-glucan
- Genome ID: Rep_2297
- CGC Family ID: CGCFAM_00020
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2297_c_1 | Rep_2297_c_1_253 | 286606 | 288450 | + | 4.A.1.2.11 |
| CAZyme | Rep_2297_c_1 | Rep_2297_c_1_254 | 288499 | 289911 | + | GH1 |
| pfam | Rep_2297_c_1 | Rep_2297_c_1_255 | 289936 | 290784 | + | PRD | PRD | CAT_RBD |
| TC | Rep_2297_c_1 | Rep_2297_c_1_256 | 291142 | 292317 | + | 2.A.36.2.1 |
Gene ID: Rep_2297_c_1_253
Type: TC
Location: 286606 - 288450 (+)
Type: TC
Location: 286606 - 288450 (+)
Gene ID: Rep_2297_c_1_254
Type: CAZyme
Location: 288499 - 289911 (+)
Type: CAZyme
Location: 288499 - 289911 (+)
Gene ID: Rep_2297_c_1_255
Type: pfam
Location: 289936 - 290784 (+)
Type: pfam
Location: 289936 - 290784 (+)
Gene ID: Rep_2297_c_1_256
Type: TC
Location: 291142 - 292317 (+)
Type: TC
Location: 291142 - 292317 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Ruminococcus_B
Species
Ruminococcus_B gnavus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.