Cluster: Rep_2297_CGC13
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_2297
- CGC Family ID: CGCFAM_04292
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2297_c_1 | Rep_2297_c_1_148 | 168208 | 168990 | + | 3.A.1.103.6 |
| TC | Rep_2297_c_1 | Rep_2297_c_1_149 | 169014 | 169754 | + | 3.A.1.103.1 |
| NULL(UNKNOWN) | Rep_2297_c_1 | Rep_2297_c_1_150 | 169771 | 170376 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2297_c_1 | Rep_2297_c_1_151 | 170398 | 172899 | + | GT2 | GT2 |
| pfam | Rep_2297_c_1 | Rep_2297_c_1_152 | 172919 | 175072 | + | DUF7654 | DUF7657 |
| CAZyme | Rep_2297_c_1 | Rep_2297_c_1_153 | 175083 | 176006 | + | GT2 |
| pfam | Rep_2297_c_1 | Rep_2297_c_1_154 | 176036 | 176884 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| pfam | Rep_2297_c_1 | Rep_2297_c_1_155 | 176900 | 177511 | + | Germane |
| CAZyme | Rep_2297_c_1 | Rep_2297_c_1_156 | 177579 | 178559 | - | GT2 |
| TC | Rep_2297_c_1 | Rep_2297_c_1_157 | 178786 | 180192 | + | 9.B.18.1.1 |
| pfam | Rep_2297_c_1 | Rep_2297_c_1_158 | 180208 | 181290 | + | LytR_cpsA_psr |
| NULL(UNKNOWN) | Rep_2297_c_1 | Rep_2297_c_1_159 | 181306 | 182637 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2297_c_1 | Rep_2297_c_1_160 | 182624 | 183550 | + | GT2 |
Gene ID: Rep_2297_c_1_148
Type: TC
Location: 168208 - 168990 (+)
Type: TC
Location: 168208 - 168990 (+)
Gene ID: Rep_2297_c_1_149
Type: TC
Location: 169014 - 169754 (+)
Type: TC
Location: 169014 - 169754 (+)
Gene ID: Rep_2297_c_1_150
Type:
Location: 169771 - 170376 (+)
Type:
Location: 169771 - 170376 (+)
Gene ID: Rep_2297_c_1_151
Type: CAZyme
Location: 170398 - 172899 (+)
Type: CAZyme
Location: 170398 - 172899 (+)
Gene ID: Rep_2297_c_1_152
Type: pfam
Location: 172919 - 175072 (+)
Type: pfam
Location: 172919 - 175072 (+)
Gene ID: Rep_2297_c_1_153
Type: CAZyme
Location: 175083 - 176006 (+)
Type: CAZyme
Location: 175083 - 176006 (+)
Gene ID: Rep_2297_c_1_154
Type: pfam
Location: 176036 - 176884 (+)
Type: pfam
Location: 176036 - 176884 (+)
Gene ID: Rep_2297_c_1_155
Type: pfam
Location: 176900 - 177511 (+)
Type: pfam
Location: 176900 - 177511 (+)
Gene ID: Rep_2297_c_1_156
Type: CAZyme
Location: 177579 - 178559 (-)
Type: CAZyme
Location: 177579 - 178559 (-)
Gene ID: Rep_2297_c_1_157
Type: TC
Location: 178786 - 180192 (+)
Type: TC
Location: 178786 - 180192 (+)
Gene ID: Rep_2297_c_1_158
Type: pfam
Location: 180208 - 181290 (+)
Type: pfam
Location: 180208 - 181290 (+)
Gene ID: Rep_2297_c_1_159
Type:
Location: 181306 - 182637 (+)
Type:
Location: 181306 - 182637 (+)
Gene ID: Rep_2297_c_1_160
Type: CAZyme
Location: 182624 - 183550 (+)
Type: CAZyme
Location: 182624 - 183550 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Ruminococcus_B
Species
Ruminococcus_B gnavus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.