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Cluster: Rep_2275_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2275_c_21 Rep_2275_c_21_3 1542 3035 - GH32
NULL(UNKNOWN) Rep_2275_c_21 Rep_2275_c_21_4 3075 4781 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2275_c_21 Rep_2275_c_21_5 4796 5692 - 3.A.1.1.29
TC Rep_2275_c_21 Rep_2275_c_21_6 5704 6645 - 3.A.1.1.10
TF Rep_2275_c_21 Rep_2275_c_21_7 6898 7911 + LacI
TC Rep_2275_c_21 Rep_2275_c_21_8 8075 9244 + 2.A.50.2.1
TC Rep_2275_c_21 Rep_2275_c_21_9 9239 10369 - 2.A.86.1.3
STP Rep_2275_c_21 Rep_2275_c_21_10 10542 11153 - NUDIX
TC Rep_2275_c_21 Rep_2275_c_21_11 11156 11791 - 2.A.87.1.3
Gene ID: Rep_2275_c_21_3
Type: CAZyme
Location: 1542 - 3035 (-)
Gene ID: Rep_2275_c_21_4
Type:
Location: 3075 - 4781 (-)
Gene ID: Rep_2275_c_21_5
Type: TC
Location: 4796 - 5692 (-)
Gene ID: Rep_2275_c_21_6
Type: TC
Location: 5704 - 6645 (-)
Gene ID: Rep_2275_c_21_7
Type: TF
Location: 6898 - 7911 (+)
Gene ID: Rep_2275_c_21_8
Type: TC
Location: 8075 - 9244 (+)
Gene ID: Rep_2275_c_21_9
Type: TC
Location: 9239 - 10369 (-)
Gene ID: Rep_2275_c_21_10
Type: STP
Location: 10542 - 11153 (-)
Gene ID: Rep_2275_c_21_11
Type: TC
Location: 11156 - 11791 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2275_c_21_6 vegan > omnivore 1.27806 0.03762

🧭 Explore Read Mapping of CGC

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