Cluster: Rep_224_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: pectin
- Genome ID: Rep_224
- CGC Family ID: CGCFAM_00108
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_224_c_27 | Rep_224_c_27_10 | 14381 | 17488 | + | 1.B.14.6.1 |
| pfam | Rep_224_c_27 | Rep_224_c_27_11 | 17540 | 19309 | + | SusD_RagB | SusD-like_3 |
| TC | Rep_224_c_27 | Rep_224_c_27_12 | 19331 | 22564 | + | 1.B.14.6.1 |
| pfam | Rep_224_c_27 | Rep_224_c_27_13 | 22609 | 24408 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_224_c_27 | Rep_224_c_27_14 | 24424 | 24981 | + | Por_Secre_tail |
| CAZyme | Rep_224_c_27 | Rep_224_c_27_15 | 25002 | 26771 | + | GH43_4 |
| CAZyme | Rep_224_c_27 | Rep_224_c_27_16 | 26791 | 27789 | + | GH43_5 |
Gene ID: Rep_224_c_27_10
Type: TC
Location: 14381 - 17488 (+)
Type: TC
Location: 14381 - 17488 (+)
Gene ID: Rep_224_c_27_11
Type: pfam
Location: 17540 - 19309 (+)
Type: pfam
Location: 17540 - 19309 (+)
Gene ID: Rep_224_c_27_12
Type: TC
Location: 19331 - 22564 (+)
Type: TC
Location: 19331 - 22564 (+)
Gene ID: Rep_224_c_27_13
Type: pfam
Location: 22609 - 24408 (+)
Type: pfam
Location: 22609 - 24408 (+)
Gene ID: Rep_224_c_27_14
Type: pfam
Location: 24424 - 24981 (+)
Type: pfam
Location: 24424 - 24981 (+)
Gene ID: Rep_224_c_27_15
Type: CAZyme
Location: 25002 - 26771 (+)
Type: CAZyme
Location: 25002 - 26771 (+)
Gene ID: Rep_224_c_27_16
Type: CAZyme
Location: 26791 - 27789 (+)
Type: CAZyme
Location: 26791 - 27789 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.