dbCAN Logo

Cluster: Rep_224_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_224_c_25 Rep_224_c_25_15 23524 24867 + 2.A.38.1.1
TC Rep_224_c_25 Rep_224_c_25_16 24864 26321 + 2.A.38.1.3
pfam Rep_224_c_25 Rep_224_c_25_17 26391 27353 + PMI_typeI_cat | MPI_cupin_dom
TF Rep_224_c_25 Rep_224_c_25_18 27488 28522 + HTH_AraC | HTH_AraC
CAZyme Rep_224_c_25 Rep_224_c_25_19 28565 31333 - GH2
Gene ID: Rep_224_c_25_15
Type: TC
Location: 23524 - 24867 (+)
Gene ID: Rep_224_c_25_16
Type: TC
Location: 24864 - 26321 (+)
Gene ID: Rep_224_c_25_17
Type: pfam
Location: 26391 - 27353 (+)
Gene ID: Rep_224_c_25_18
Type: TF
Location: 27488 - 28522 (+)
Gene ID: Rep_224_c_25_19
Type: CAZyme
Location: 28565 - 31333 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_224_c_25_17 vegetarian > vegan 1.04031 0.00861

🧭 Explore Read Mapping of CGC

← Back to Cluster List