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Cluster: Rep_224_CGC56

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_224_c_185 Rep_224_c_185_2 936 3656 - 4.A.2.1.17
pfam Rep_224_c_185 Rep_224_c_185_3 3962 5419 + tRNA_U5-meth_tr | Methyltransf_15 | Methyltransf_31
pfam Rep_224_c_185 Rep_224_c_185_4 5455 6585 + Porin_O_P | Porin_4
TC Rep_224_c_185 Rep_224_c_185_5 6657 7949 - 9.B.168.1.2
TC Rep_224_c_185 Rep_224_c_185_6 8094 10037 + 2.A.9.3.1
peptidase Rep_224_c_185 Rep_224_c_185_7 10061 12220 + S09.UPC
TF Rep_224_c_185 Rep_224_c_185_8 12413 14779 + HTH_AraC
CAZyme Rep_224_c_185 Rep_224_c_185_9 14890 17412 + GH115
CAZyme Rep_224_c_185 Rep_224_c_185_10 17437 20217 + GH2
TC Rep_224_c_185 Rep_224_c_185_11 20311 21831 - 2.A.17.1.6
Gene ID: Rep_224_c_185_2
Type: TC
Location: 936 - 3656 (-)
Gene ID: Rep_224_c_185_3
Type: pfam
Location: 3962 - 5419 (+)
Gene ID: Rep_224_c_185_4
Type: pfam
Location: 5455 - 6585 (+)
Gene ID: Rep_224_c_185_5
Type: TC
Location: 6657 - 7949 (-)
Gene ID: Rep_224_c_185_6
Type: TC
Location: 8094 - 10037 (+)
Gene ID: Rep_224_c_185_7
Type: peptidase
Location: 10061 - 12220 (+)
Gene ID: Rep_224_c_185_8
Type: TF
Location: 12413 - 14779 (+)
Gene ID: Rep_224_c_185_9
Type: CAZyme
Location: 14890 - 17412 (+)
Gene ID: Rep_224_c_185_10
Type: CAZyme
Location: 17437 - 20217 (+)
Gene ID: Rep_224_c_185_11
Type: TC
Location: 20311 - 21831 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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