Cluster: Rep_224_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate: arabinogalactan
- Genome ID: Rep_224
- CGC Family ID: CGCFAM_00225
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_224_c_15 | Rep_224_c_15_1 | 671 | 3136 | - | GH127 |
| CAZyme | Rep_224_c_15 | Rep_224_c_15_2 | 3182 | 5635 | - | CBM32 | GH43_34 |
| CAZyme | Rep_224_c_15 | Rep_224_c_15_3 | 5694 | 7670 | - | GH97 |
| CAZyme | Rep_224_c_15 | Rep_224_c_15_4 | 7927 | 11280 | + | GH146 |
| NULL(UNKNOWN) | Rep_224_c_15 | Rep_224_c_15_5 | 11399 | 11542 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_224_c_15 | Rep_224_c_15_6 | 11586 | 14606 | + | 1.B.14.6.1 |
Gene ID: Rep_224_c_15_1
Type: CAZyme
Location: 671 - 3136 (-)
Type: CAZyme
Location: 671 - 3136 (-)
Gene ID: Rep_224_c_15_2
Type: CAZyme
Location: 3182 - 5635 (-)
Type: CAZyme
Location: 3182 - 5635 (-)
Gene ID: Rep_224_c_15_3
Type: CAZyme
Location: 5694 - 7670 (-)
Type: CAZyme
Location: 5694 - 7670 (-)
Gene ID: Rep_224_c_15_4
Type: CAZyme
Location: 7927 - 11280 (+)
Type: CAZyme
Location: 7927 - 11280 (+)
Gene ID: Rep_224_c_15_5
Type:
Location: 11399 - 11542 (-)
Type:
Location: 11399 - 11542 (-)
Gene ID: Rep_224_c_15_6
Type: TC
Location: 11586 - 14606 (+)
Type: TC
Location: 11586 - 14606 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.