Cluster: Rep_224_CGC43
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_224
- CGC Family ID: CGCFAM_01077
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_224_c_128 | Rep_224_c_128_1 | 862 | 1989 | - | GH16_3 |
| NULL(UNKNOWN) | Rep_224_c_128 | Rep_224_c_128_2 | 2075 | 3976 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_224_c_128 | Rep_224_c_128_3 | 4050 | 5570 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_224_c_128 | Rep_224_c_128_4 | 5596 | 8781 | - | 1.B.14.6.1 |
| TF | Rep_224_c_128 | Rep_224_c_128_5 | 9588 | 12494 | - | GerE |
| TC | Rep_224_c_128 | Rep_224_c_128_6 | 12740 | 15811 | + | 1.B.14.6.1 |
| TC | Rep_224_c_128 | Rep_224_c_128_7 | 15852 | 17507 | + | 8.A.46.1.2 |
| NULL(UNKNOWN) | Rep_224_c_128 | Rep_224_c_128_8 | 17550 | 18179 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_224_c_128 | Rep_224_c_128_9 | 18332 | 20656 | + | GH88 | PL38 |
| CAZyme | Rep_224_c_128 | Rep_224_c_128_10 | 20663 | 23233 | + | CBM57 | GH2 |
| CAZyme | Rep_224_c_128 | Rep_224_c_128_11 | 23270 | 25582 | + | GH2 |
Gene ID: Rep_224_c_128_1
Type: CAZyme
Location: 862 - 1989 (-)
Type: CAZyme
Location: 862 - 1989 (-)
Gene ID: Rep_224_c_128_2
Type:
Location: 2075 - 3976 (-)
Type:
Location: 2075 - 3976 (-)
Gene ID: Rep_224_c_128_3
Type: pfam
Location: 4050 - 5570 (-)
Type: pfam
Location: 4050 - 5570 (-)
Gene ID: Rep_224_c_128_4
Type: TC
Location: 5596 - 8781 (-)
Type: TC
Location: 5596 - 8781 (-)
Gene ID: Rep_224_c_128_5
Type: TF
Location: 9588 - 12494 (-)
Type: TF
Location: 9588 - 12494 (-)
Gene ID: Rep_224_c_128_6
Type: TC
Location: 12740 - 15811 (+)
Type: TC
Location: 12740 - 15811 (+)
Gene ID: Rep_224_c_128_7
Type: TC
Location: 15852 - 17507 (+)
Type: TC
Location: 15852 - 17507 (+)
Gene ID: Rep_224_c_128_8
Type:
Location: 17550 - 18179 (+)
Type:
Location: 17550 - 18179 (+)
Gene ID: Rep_224_c_128_9
Type: CAZyme
Location: 18332 - 20656 (+)
Type: CAZyme
Location: 18332 - 20656 (+)
Gene ID: Rep_224_c_128_10
Type: CAZyme
Location: 20663 - 23233 (+)
Type: CAZyme
Location: 20663 - 23233 (+)
Gene ID: Rep_224_c_128_11
Type: CAZyme
Location: 23270 - 25582 (+)
Type: CAZyme
Location: 23270 - 25582 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.