Cluster: Rep_224_CGC39
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_224
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_224_c_123 | Rep_224_c_123_2 | 1784 | 2593 | - | GT5 |
| pfam | Rep_224_c_123 | Rep_224_c_123_3 | 2742 | 3620 | + | Pantoate_ligase |
| pfam | Rep_224_c_123 | Rep_224_c_123_4 | 3645 | 3989 | + | Asp_decarbox |
| TC | Rep_224_c_123 | Rep_224_c_123_5 | 4041 | 4805 | - | 3.A.25.2.1 |
| pfam | Rep_224_c_123 | Rep_224_c_123_6 | 4908 | 5330 | - | Biotin_lipoyl | Biotin_lipoyl_2 |
| NULL(UNKNOWN) | Rep_224_c_123 | Rep_224_c_123_7 | 5336 | 5485 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_224_c_123 | Rep_224_c_123_8 | 5515 | 7080 | - | 3.B.1.1.2 |
| TC | Rep_224_c_123 | Rep_224_c_123_9 | 7201 | 9597 | - | 1.B.14.6.7 |
Gene ID: Rep_224_c_123_2
Type: CAZyme
Location: 1784 - 2593 (-)
Type: CAZyme
Location: 1784 - 2593 (-)
Gene ID: Rep_224_c_123_3
Type: pfam
Location: 2742 - 3620 (+)
Type: pfam
Location: 2742 - 3620 (+)
Gene ID: Rep_224_c_123_4
Type: pfam
Location: 3645 - 3989 (+)
Type: pfam
Location: 3645 - 3989 (+)
Gene ID: Rep_224_c_123_5
Type: TC
Location: 4041 - 4805 (-)
Type: TC
Location: 4041 - 4805 (-)
Gene ID: Rep_224_c_123_6
Type: pfam
Location: 4908 - 5330 (-)
Type: pfam
Location: 4908 - 5330 (-)
Gene ID: Rep_224_c_123_7
Type:
Location: 5336 - 5485 (-)
Type:
Location: 5336 - 5485 (-)
Gene ID: Rep_224_c_123_8
Type: TC
Location: 5515 - 7080 (-)
Type: TC
Location: 5515 - 7080 (-)
Gene ID: Rep_224_c_123_9
Type: TC
Location: 7201 - 9597 (-)
Type: TC
Location: 7201 - 9597 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.