Cluster: Rep_224_CGC30
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_224
- CGC Family ID: CGCFAM_11247
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_224_c_81 | Rep_224_c_81_13 | 13926 | 14750 | - | 1.A.30.1.4 |
| NULL(UNKNOWN) | Rep_224_c_81 | Rep_224_c_81_14 | 15040 | 15390 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | Rep_224_c_81 | Rep_224_c_81_15 | 15413 | 19135 | + | C56.972 |
| TC | Rep_224_c_81 | Rep_224_c_81_16 | 19138 | 19683 | + | 2.A.51.1.6 |
| TC | Rep_224_c_81 | Rep_224_c_81_17 | 19705 | 20277 | + | 2.A.51.1.6 |
| CAZyme | Rep_224_c_81 | Rep_224_c_81_18 | 20388 | 22763 | - | GH2 |
| TF | Rep_224_c_81 | Rep_224_c_81_19 | 23063 | 25930 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_224_c_81 | Rep_224_c_81_20 | 26242 | 28689 | + | GH51_2 |
| NULL(UNKNOWN) | Rep_224_c_81 | Rep_224_c_81_21 | 28743 | 28841 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | Rep_224_c_81 | Rep_224_c_81_22 | 28886 | 29758 | + | PfkB |
| TC | Rep_224_c_81 | Rep_224_c_81_23 | 29774 | 30631 | - | 3.A.1.13.2 |
| pfam | Rep_224_c_81 | Rep_224_c_81_24 | 30663 | 32273 | + | PseudoU_synth_2 |
| TC | Rep_224_c_81 | Rep_224_c_81_25 | 32274 | 33932 | - | 2.A.81.1.2 |
Gene ID: Rep_224_c_81_13
Type: TC
Location: 13926 - 14750 (-)
Type: TC
Location: 13926 - 14750 (-)
Gene ID: Rep_224_c_81_14
Type:
Location: 15040 - 15390 (-)
Type:
Location: 15040 - 15390 (-)
Gene ID: Rep_224_c_81_15
Type: peptidase
Location: 15413 - 19135 (+)
Type: peptidase
Location: 15413 - 19135 (+)
Gene ID: Rep_224_c_81_16
Type: TC
Location: 19138 - 19683 (+)
Type: TC
Location: 19138 - 19683 (+)
Gene ID: Rep_224_c_81_17
Type: TC
Location: 19705 - 20277 (+)
Type: TC
Location: 19705 - 20277 (+)
Gene ID: Rep_224_c_81_18
Type: CAZyme
Location: 20388 - 22763 (-)
Type: CAZyme
Location: 20388 - 22763 (-)
Gene ID: Rep_224_c_81_19
Type: TF
Location: 23063 - 25930 (-)
Type: TF
Location: 23063 - 25930 (-)
Gene ID: Rep_224_c_81_20
Type: CAZyme
Location: 26242 - 28689 (+)
Type: CAZyme
Location: 26242 - 28689 (+)
Gene ID: Rep_224_c_81_21
Type:
Location: 28743 - 28841 (+)
Type:
Location: 28743 - 28841 (+)
Gene ID: Rep_224_c_81_22
Type: STP
Location: 28886 - 29758 (+)
Type: STP
Location: 28886 - 29758 (+)
Gene ID: Rep_224_c_81_23
Type: TC
Location: 29774 - 30631 (-)
Type: TC
Location: 29774 - 30631 (-)
Gene ID: Rep_224_c_81_24
Type: pfam
Location: 30663 - 32273 (+)
Type: pfam
Location: 30663 - 32273 (+)
Gene ID: Rep_224_c_81_25
Type: TC
Location: 32274 - 33932 (-)
Type: TC
Location: 32274 - 33932 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_224_c_81_16 | vegetarian > vegan | 1.04135 | 0.00861 |