Cluster: Rep_224_CGC29
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_224
- CGC Family ID: CGCFAM_00468
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_224_c_79 | Rep_224_c_79_10 | 10145 | 11455 | + | 2.A.35.1.5 |
| NULL(UNKNOWN) | Rep_224_c_79 | Rep_224_c_79_11 | 11485 | 12180 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_224_c_79 | Rep_224_c_79_12 | 12182 | 12937 | + | GH25 |
| pfam | Rep_224_c_79 | Rep_224_c_79_13 | 13026 | 14159 | + | DZR | Zn_Ribbon_1 | Zn_ribbon_3 |
| NULL(UNKNOWN) | Rep_224_c_79 | Rep_224_c_79_14 | 14572 | 14688 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_224_c_79 | Rep_224_c_79_15 | 14732 | 15334 | - | 3.D.6.1.2 |
| TC | Rep_224_c_79 | Rep_224_c_79_16 | 15356 | 15940 | - | 3.D.6.1.2 |
| TC | Rep_224_c_79 | Rep_224_c_79_17 | 15947 | 16579 | - | 3.D.6.1.2 |
| TC | Rep_224_c_79 | Rep_224_c_79_18 | 16592 | 17590 | - | 3.D.6.1.2 |
| TC | Rep_224_c_79 | Rep_224_c_79_19 | 17594 | 18949 | - | 3.D.6.1.2 |
| TC | Rep_224_c_79 | Rep_224_c_79_20 | 18946 | 19797 | - | 3.D.6.1.3 |
Gene ID: Rep_224_c_79_10
Type: TC
Location: 10145 - 11455 (+)
Type: TC
Location: 10145 - 11455 (+)
Gene ID: Rep_224_c_79_11
Type:
Location: 11485 - 12180 (+)
Type:
Location: 11485 - 12180 (+)
Gene ID: Rep_224_c_79_12
Type: CAZyme
Location: 12182 - 12937 (+)
Type: CAZyme
Location: 12182 - 12937 (+)
Gene ID: Rep_224_c_79_13
Type: pfam
Location: 13026 - 14159 (+)
Type: pfam
Location: 13026 - 14159 (+)
Gene ID: Rep_224_c_79_14
Type:
Location: 14572 - 14688 (-)
Type:
Location: 14572 - 14688 (-)
Gene ID: Rep_224_c_79_15
Type: TC
Location: 14732 - 15334 (-)
Type: TC
Location: 14732 - 15334 (-)
Gene ID: Rep_224_c_79_16
Type: TC
Location: 15356 - 15940 (-)
Type: TC
Location: 15356 - 15940 (-)
Gene ID: Rep_224_c_79_17
Type: TC
Location: 15947 - 16579 (-)
Type: TC
Location: 15947 - 16579 (-)
Gene ID: Rep_224_c_79_18
Type: TC
Location: 16592 - 17590 (-)
Type: TC
Location: 16592 - 17590 (-)
Gene ID: Rep_224_c_79_19
Type: TC
Location: 17594 - 18949 (-)
Type: TC
Location: 17594 - 18949 (-)
Gene ID: Rep_224_c_79_20
Type: TC
Location: 18946 - 19797 (-)
Type: TC
Location: 18946 - 19797 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_224_c_79_17 | vegetarian > vegan | 1.71392 | 0.00861 |
| Rep_224_c_79_18 | vegetarian > vegan | 1.07916 | 0.00861 |