Cluster: Rep_224_CGC25
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_224
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_224_c_70 | Rep_224_c_70_1 | 635 | 1945 | + | 1.B.3.1.7 |
| peptidase | Rep_224_c_70 | Rep_224_c_70_2 | 2104 | 3420 | + | M75.UPW |
| pfam | Rep_224_c_70 | Rep_224_c_70_3 | 3583 | 5334 | + | Cytochrom_C | DHOR |
| TC | Rep_224_c_70 | Rep_224_c_70_4 | 5473 | 6852 | + | 9.B.14.3.1 |
| pfam | Rep_224_c_70 | Rep_224_c_70_5 | 6915 | 8012 | + | OprB |
| pfam | Rep_224_c_70 | Rep_224_c_70_6 | 8121 | 8699 | - | Thioredoxin | AhpC-TSA | Redoxin | Thioredoxin_8 |
| CAZyme | Rep_224_c_70 | Rep_224_c_70_7 | 8870 | 11788 | + | PL26 |
| pfam | Rep_224_c_70 | Rep_224_c_70_8 | 11893 | 12459 | - | PTPS |
| pfam | Rep_224_c_70 | Rep_224_c_70_9 | 12820 | 13677 | + | adh_short | adh_short_C2 |
| CAZyme | Rep_224_c_70 | Rep_224_c_70_10 | 13758 | 16049 | - | GH3 |
| pfam | Rep_224_c_70 | Rep_224_c_70_11 | 16353 | 17972 | + | DUF6377 |
| CAZyme | Rep_224_c_70 | Rep_224_c_70_12 | 18024 | 20261 | - | GH3 |
Gene ID: Rep_224_c_70_1
Type: TC
Location: 635 - 1945 (+)
Type: TC
Location: 635 - 1945 (+)
Gene ID: Rep_224_c_70_2
Type: peptidase
Location: 2104 - 3420 (+)
Type: peptidase
Location: 2104 - 3420 (+)
Gene ID: Rep_224_c_70_3
Type: pfam
Location: 3583 - 5334 (+)
Type: pfam
Location: 3583 - 5334 (+)
Gene ID: Rep_224_c_70_4
Type: TC
Location: 5473 - 6852 (+)
Type: TC
Location: 5473 - 6852 (+)
Gene ID: Rep_224_c_70_5
Type: pfam
Location: 6915 - 8012 (+)
Type: pfam
Location: 6915 - 8012 (+)
Gene ID: Rep_224_c_70_6
Type: pfam
Location: 8121 - 8699 (-)
Type: pfam
Location: 8121 - 8699 (-)
Gene ID: Rep_224_c_70_7
Type: CAZyme
Location: 8870 - 11788 (+)
Type: CAZyme
Location: 8870 - 11788 (+)
Gene ID: Rep_224_c_70_8
Type: pfam
Location: 11893 - 12459 (-)
Type: pfam
Location: 11893 - 12459 (-)
Gene ID: Rep_224_c_70_9
Type: pfam
Location: 12820 - 13677 (+)
Type: pfam
Location: 12820 - 13677 (+)
Gene ID: Rep_224_c_70_10
Type: CAZyme
Location: 13758 - 16049 (-)
Type: CAZyme
Location: 13758 - 16049 (-)
Gene ID: Rep_224_c_70_11
Type: pfam
Location: 16353 - 17972 (+)
Type: pfam
Location: 16353 - 17972 (+)
Gene ID: Rep_224_c_70_12
Type: CAZyme
Location: 18024 - 20261 (-)
Type: CAZyme
Location: 18024 - 20261 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.