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Cluster: Rep_224_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_224_c_3 Rep_224_c_3_3 1414 3057 + GH29
TC Rep_224_c_3 Rep_224_c_3_4 3183 6257 + 1.B.14.6.1
TC Rep_224_c_3 Rep_224_c_3_5 6282 7967 + 8.A.46.1.5
TC Rep_224_c_3 Rep_224_c_3_6 8230 9162 + 8.A.5.1.6
pfam Rep_224_c_3 Rep_224_c_3_7 9178 10104 + Amidohydro_2
TC Rep_224_c_3 Rep_224_c_3_8 10111 10422 + 2.A.1.7.1
Gene ID: Rep_224_c_3_3
Type: CAZyme
Location: 1414 - 3057 (+)
Gene ID: Rep_224_c_3_4
Type: TC
Location: 3183 - 6257 (+)
Gene ID: Rep_224_c_3_5
Type: TC
Location: 6282 - 7967 (+)
Gene ID: Rep_224_c_3_6
Type: TC
Location: 8230 - 9162 (+)
Gene ID: Rep_224_c_3_7
Type: pfam
Location: 9178 - 10104 (+)
Gene ID: Rep_224_c_3_8
Type: TC
Location: 10111 - 10422 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_224_c_3_8 vegan > omnivore 2.16693 0.03757
Rep_224_c_3_8 vegetarian > omnivore 2.77650 0.01882

🧭 Explore Read Mapping of CGC

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