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Cluster: Rep_224_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_224_c_47 Rep_224_c_47_11 12864 13823 - CE8
STP Rep_224_c_47 Rep_224_c_47_12 13849 16164 - HD
CAZyme Rep_224_c_47 Rep_224_c_47_13 16185 17537 - GH23
pfam Rep_224_c_47 Rep_224_c_47_14 17616 18317 - DUF5683
TF Rep_224_c_47 Rep_224_c_47_15 18333 19244 - HTH_3
TC Rep_224_c_47 Rep_224_c_47_16 19255 20019 - 8.A.3.2.3
pfam Rep_224_c_47 Rep_224_c_47_17 20152 20913 + SurE
CAZyme Rep_224_c_47 Rep_224_c_47_18 20935 22350 + GT19
Gene ID: Rep_224_c_47_11
Type: CAZyme
Location: 12864 - 13823 (-)
Gene ID: Rep_224_c_47_12
Type: STP
Location: 13849 - 16164 (-)
Gene ID: Rep_224_c_47_13
Type: CAZyme
Location: 16185 - 17537 (-)
Gene ID: Rep_224_c_47_14
Type: pfam
Location: 17616 - 18317 (-)
Gene ID: Rep_224_c_47_15
Type: TF
Location: 18333 - 19244 (-)
Gene ID: Rep_224_c_47_16
Type: TC
Location: 19255 - 20019 (-)
Gene ID: Rep_224_c_47_17
Type: pfam
Location: 20152 - 20913 (+)
Gene ID: Rep_224_c_47_18
Type: CAZyme
Location: 20935 - 22350 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_224_c_47_13 vegetarian > vegan 1.10627 0.00861
Rep_224_c_47_17 vegetarian > vegan 1.56329 0.00861

🧭 Explore Read Mapping of CGC

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