Cluster: Rep_224_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_224
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_224_c_35 | Rep_224_c_35_1 | 190 | 3054 | - | GH2 |
| CAZyme | Rep_224_c_35 | Rep_224_c_35_2 | 3357 | 4358 | - | CE4 |
| TF | Rep_224_c_35 | Rep_224_c_35_3 | 4610 | 8368 | + | HTH_AraC |
| TC | Rep_224_c_35 | Rep_224_c_35_4 | 8589 | 11768 | + | 1.B.14.6.1 |
| pfam | Rep_224_c_35 | Rep_224_c_35_5 | 11775 | 13817 | + | SusD_RagB | SusD-like_3 |
| TC | Rep_224_c_35 | Rep_224_c_35_6 | 13865 | 16681 | + | 1.B.14.6.1 |
| TC | Rep_224_c_35 | Rep_224_c_35_7 | 16711 | 18441 | + | 8.A.46.1.3 |
Gene ID: Rep_224_c_35_1
Type: CAZyme
Location: 190 - 3054 (-)
Type: CAZyme
Location: 190 - 3054 (-)
Gene ID: Rep_224_c_35_2
Type: CAZyme
Location: 3357 - 4358 (-)
Type: CAZyme
Location: 3357 - 4358 (-)
Gene ID: Rep_224_c_35_3
Type: TF
Location: 4610 - 8368 (+)
Type: TF
Location: 4610 - 8368 (+)
Gene ID: Rep_224_c_35_4
Type: TC
Location: 8589 - 11768 (+)
Type: TC
Location: 8589 - 11768 (+)
Gene ID: Rep_224_c_35_5
Type: pfam
Location: 11775 - 13817 (+)
Type: pfam
Location: 11775 - 13817 (+)
Gene ID: Rep_224_c_35_6
Type: TC
Location: 13865 - 16681 (+)
Type: TC
Location: 13865 - 16681 (+)
Gene ID: Rep_224_c_35_7
Type: TC
Location: 16711 - 18441 (+)
Type: TC
Location: 16711 - 18441 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.