Cluster: Rep_224_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_224
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_224_c_32 | Rep_224_c_32_4 | 8160 | 11453 | + | 1.B.14.6.1 |
| pfam | Rep_224_c_32 | Rep_224_c_32_5 | 11484 | 13490 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | Rep_224_c_32 | Rep_224_c_32_6 | 13534 | 13701 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_224_c_32 | Rep_224_c_32_7 | 13643 | 15412 | - | PL1_2 |
| pfam | Rep_224_c_32 | Rep_224_c_32_8 | 15631 | 17238 | + | Phosphodiest |
| pfam | Rep_224_c_32 | Rep_224_c_32_9 | 17277 | 17585 | + | ClpS |
| TC | Rep_224_c_32 | Rep_224_c_32_10 | 17615 | 19870 | + | 3.A.9.1.2 |
Gene ID: Rep_224_c_32_4
Type: TC
Location: 8160 - 11453 (+)
Type: TC
Location: 8160 - 11453 (+)
Gene ID: Rep_224_c_32_5
Type: pfam
Location: 11484 - 13490 (+)
Type: pfam
Location: 11484 - 13490 (+)
Gene ID: Rep_224_c_32_6
Type:
Location: 13534 - 13701 (+)
Type:
Location: 13534 - 13701 (+)
Gene ID: Rep_224_c_32_7
Type: CAZyme
Location: 13643 - 15412 (-)
Type: CAZyme
Location: 13643 - 15412 (-)
Gene ID: Rep_224_c_32_8
Type: pfam
Location: 15631 - 17238 (+)
Type: pfam
Location: 15631 - 17238 (+)
Gene ID: Rep_224_c_32_9
Type: pfam
Location: 17277 - 17585 (+)
Type: pfam
Location: 17277 - 17585 (+)
Gene ID: Rep_224_c_32_10
Type: TC
Location: 17615 - 19870 (+)
Type: TC
Location: 17615 - 19870 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.