Cluster: Rep_224_CGC10
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_224
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_224_c_29 | Rep_224_c_29_4 | 3253 | 4866 | - | 8.A.46.1.1 |
| TC | Rep_224_c_29 | Rep_224_c_29_5 | 4885 | 7968 | - | 1.B.14.6.1 |
| TF | Rep_224_c_29 | Rep_224_c_29_6 | 8299 | 9321 | + | LacI |
| TC | Rep_224_c_29 | Rep_224_c_29_7 | 9366 | 10682 | + | 2.A.2.6.2 |
| CAZyme | Rep_224_c_29 | Rep_224_c_29_8 | 10801 | 13479 | + | GH77 |
| CAZyme | Rep_224_c_29 | Rep_224_c_29_9 | 13625 | 15757 | + | GH97 |
| CAZyme | Rep_224_c_29 | Rep_224_c_29_10 | 15793 | 17742 | + | GH13_14 |
| CAZyme | Rep_224_c_29 | Rep_224_c_29_11 | 17833 | 19680 | + | GH13_46 |
Gene ID: Rep_224_c_29_4
Type: TC
Location: 3253 - 4866 (-)
Type: TC
Location: 3253 - 4866 (-)
Gene ID: Rep_224_c_29_5
Type: TC
Location: 4885 - 7968 (-)
Type: TC
Location: 4885 - 7968 (-)
Gene ID: Rep_224_c_29_6
Type: TF
Location: 8299 - 9321 (+)
Type: TF
Location: 8299 - 9321 (+)
Gene ID: Rep_224_c_29_7
Type: TC
Location: 9366 - 10682 (+)
Type: TC
Location: 9366 - 10682 (+)
Gene ID: Rep_224_c_29_8
Type: CAZyme
Location: 10801 - 13479 (+)
Type: CAZyme
Location: 10801 - 13479 (+)
Gene ID: Rep_224_c_29_9
Type: CAZyme
Location: 13625 - 15757 (+)
Type: CAZyme
Location: 13625 - 15757 (+)
Gene ID: Rep_224_c_29_10
Type: CAZyme
Location: 15793 - 17742 (+)
Type: CAZyme
Location: 15793 - 17742 (+)
Gene ID: Rep_224_c_29_11
Type: CAZyme
Location: 17833 - 19680 (+)
Type: CAZyme
Location: 17833 - 19680 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.