Cluster: Rep_2208_CGC35
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_2208
- CGC Family ID: CGCFAM_04616
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2208_c_20 | Rep_2208_c_20_10 | 9870 | 11351 | - | GH25 |
| pfam | Rep_2208_c_20 | Rep_2208_c_20_11 | 11609 | 12943 | - | Enolase_C | Enolase_N |
| CAZyme | Rep_2208_c_20 | Rep_2208_c_20_12 | 13039 | 14799 | + | GT39 |
| NULL(UNKNOWN) | Rep_2208_c_20 | Rep_2208_c_20_13 | 14774 | 15979 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_2208_c_20 | Rep_2208_c_20_14 | 16108 | 16722 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2208_c_20 | Rep_2208_c_20_15 | 16748 | 18820 | - | GH31_4 |
| pfam | Rep_2208_c_20 | Rep_2208_c_20_16 | 19019 | 20557 | - | Phosphodiest | Metalloenzyme | iPGM_N |
| TC | Rep_2208_c_20 | Rep_2208_c_20_17 | 20634 | 21839 | - | 2.A.4.7.4 |
| TC | Rep_2208_c_20 | Rep_2208_c_20_18 | 22735 | 24468 | + | 3.A.1.106.3 |
| TC | Rep_2208_c_20 | Rep_2208_c_20_19 | 24465 | 26240 | + | 3.A.1.106.3 |
| pfam | Rep_2208_c_20 | Rep_2208_c_20_20 | 26252 | 27574 | - | TPR_11 | TPR_19 |
| TC | Rep_2208_c_20 | Rep_2208_c_20_21 | 27575 | 29224 | - | 3.A.18.1.1 |
| CAZyme | Rep_2208_c_20 | Rep_2208_c_20_22 | 29454 | 30413 | - | GT2 |
Gene ID: Rep_2208_c_20_10
Type: CAZyme
Location: 9870 - 11351 (-)
Type: CAZyme
Location: 9870 - 11351 (-)
Gene ID: Rep_2208_c_20_11
Type: pfam
Location: 11609 - 12943 (-)
Type: pfam
Location: 11609 - 12943 (-)
Gene ID: Rep_2208_c_20_12
Type: CAZyme
Location: 13039 - 14799 (+)
Type: CAZyme
Location: 13039 - 14799 (+)
Gene ID: Rep_2208_c_20_13
Type:
Location: 14774 - 15979 (-)
Type:
Location: 14774 - 15979 (-)
Gene ID: Rep_2208_c_20_14
Type:
Location: 16108 - 16722 (-)
Type:
Location: 16108 - 16722 (-)
Gene ID: Rep_2208_c_20_15
Type: CAZyme
Location: 16748 - 18820 (-)
Type: CAZyme
Location: 16748 - 18820 (-)
Gene ID: Rep_2208_c_20_16
Type: pfam
Location: 19019 - 20557 (-)
Type: pfam
Location: 19019 - 20557 (-)
Gene ID: Rep_2208_c_20_17
Type: TC
Location: 20634 - 21839 (-)
Type: TC
Location: 20634 - 21839 (-)
Gene ID: Rep_2208_c_20_18
Type: TC
Location: 22735 - 24468 (+)
Type: TC
Location: 22735 - 24468 (+)
Gene ID: Rep_2208_c_20_19
Type: TC
Location: 24465 - 26240 (+)
Type: TC
Location: 24465 - 26240 (+)
Gene ID: Rep_2208_c_20_20
Type: pfam
Location: 26252 - 27574 (-)
Type: pfam
Location: 26252 - 27574 (-)
Gene ID: Rep_2208_c_20_21
Type: TC
Location: 27575 - 29224 (-)
Type: TC
Location: 27575 - 29224 (-)
Gene ID: Rep_2208_c_20_22
Type: CAZyme
Location: 29454 - 30413 (-)
Type: CAZyme
Location: 29454 - 30413 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_20_10 | vegetarian > vegan | 1.17027 | 0.00052 |
| Rep_2208_c_20_12 | vegetarian > vegan | 2.30347 | 0.00052 |
| Rep_2208_c_20_13 | vegetarian > vegan | 3.06986 | 0.00052 |
| Rep_2208_c_20_14 | vegetarian > vegan | 1.87961 | 0.00052 |
| Rep_2208_c_20_17 | vegetarian > vegan | 1.97703 | 0.00052 |
| Rep_2208_c_20_18 | vegetarian > vegan | 1.55347 | 0.00052 |
| Rep_2208_c_20_19 | vegetarian > vegan | 1.76914 | 0.00052 |
| Rep_2208_c_20_20 | vegetarian > vegan | 1.68176 | 0.00052 |