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Cluster: Rep_2185_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2185_c_0 Rep_2185_c_0_771 783449 785074 - GH13_31
TC Rep_2185_c_0 Rep_2185_c_0_772 785091 785906 - 3.A.1.1.45
TC Rep_2185_c_0 Rep_2185_c_0_773 785906 786775 - 3.A.1.1.45
STP Rep_2185_c_0 Rep_2185_c_0_774 786869 788206 - SBP_bac_1
TF Rep_2185_c_0 Rep_2185_c_0_775 788616 789569 - LacI
TC Rep_2185_c_0 Rep_2185_c_0_776 789837 791189 - 2.A.66.1.33
pfam Rep_2185_c_0 Rep_2185_c_0_777 791439 791696 + DUF6061
CAZyme Rep_2185_c_0 Rep_2185_c_0_778 791725 793155 - GH1
pfam Rep_2185_c_0 Rep_2185_c_0_779 793254 793571 - PTS_IIA
TC Rep_2185_c_0 Rep_2185_c_0_780 793609 794922 - 4.A.3.2.8
TC Rep_2185_c_0 Rep_2185_c_0_781 794978 795286 - 4.A.3.2.2
Gene ID: Rep_2185_c_0_771
Type: CAZyme
Location: 783449 - 785074 (-)
Gene ID: Rep_2185_c_0_772
Type: TC
Location: 785091 - 785906 (-)
Gene ID: Rep_2185_c_0_773
Type: TC
Location: 785906 - 786775 (-)
Gene ID: Rep_2185_c_0_774
Type: STP
Location: 786869 - 788206 (-)
Gene ID: Rep_2185_c_0_775
Type: TF
Location: 788616 - 789569 (-)
Gene ID: Rep_2185_c_0_776
Type: TC
Location: 789837 - 791189 (-)
Gene ID: Rep_2185_c_0_777
Type: pfam
Location: 791439 - 791696 (+)
Gene ID: Rep_2185_c_0_778
Type: CAZyme
Location: 791725 - 793155 (-)
Gene ID: Rep_2185_c_0_779
Type: pfam
Location: 793254 - 793571 (-)
Gene ID: Rep_2185_c_0_780
Type: TC
Location: 793609 - 794922 (-)
Gene ID: Rep_2185_c_0_781
Type: TC
Location: 794978 - 795286 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2185_c_0_780 vegan > omnivore 2.30106 0.02385
Rep_2185_c_0_781 vegan > omnivore 2.20029 0.04965

🧭 Explore Read Mapping of CGC

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